Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04342 AACCAATCTAGACAGTTCAAGAAGCTTTCTTCGAAGAGTGGCAACATAGGAGTTGAAGTGGTACGAGGTGGTCGACGCCAGAGCGTGTCGATCTCTGAGGTGGTGGTGGGTGACATTGTGCACTTGAAGATTGGCGATCAGGTTCCCGCGGATGGGTTGTTTTTGGAGGGACATTCGTTGAAGGTGGACGAATCCAGCATGTCGGGGGAGAGTGATCACGTGAATGTGAACGCTGACGCAAACCCTTTCTTGTTATCTGGCACAAAGGTCGCTGATGGTTTTGCACGCATGCTTGTAACTTCTGTGGGTATGAACACCGCATGGGGTGCGATGATAGGCTCGACCACGAGAGAGCTTGATGAGGAGACACCTTTGCAAGTGCGTCTTAAGAAATTGACTTCAGCTATTGGTAAGGTTGGTTTGTTTGTGGCTGCACTTGTTTTGGTGGTGTCTATGATAAGATACTTCACGGGAAGTACTAGAGATGATCTTGGGAACCGGGAATTTGTCGGGAGAAAGACAAAGTTTGATGATGTCATGAATGCGGTTGTGGGAATTGTTGCTGCGGCTATGACGATTGTGGTAGTGGCCATTCCAGAAGGGTTGCCATTGGCTGTTACGCTGACTTTGGCTTATTCCATGAAAAAAATGATGAGGGATAATGCCATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCGGCAACAACGATCTGCACTGATAAAACTGGTACTCTTACGATGAATGAGATGAAGGTGAGTGAGGTTAGGGTGGGAAAAAAGCTAATAGCAGAAGGTGAGAAATTGGCGCCGAGTTTAGTCCAATTATTGAAGGAAGGAATTGGGCTGAATACCACTGGAAGTGTTTACCAGCCCCAAGAAATTTCTCTGCCTGAAATTTCAGGTAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGATGGATTTGGGGATGGACATAGATGAAGTGAAGCAGCATTGTGAGATAATTCACGTGGAGACGTTTAACTCTGAGAAGAAGCGAAGTGGGATTGTGATGAGGGAGAAGAAAGGAAGCAACAGGGTGCATACGCAGTGGAAAGGTGCTGCTGAGATGATATTGGCGATGTGTTCAAATTACTATGAGAACACAGGGGAAATCATGATCATGGGTGATGAAGAACGAGCACAAATCGGGAATATTGTGAAAAGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAGAAGAGTTCAAACGGGAATTTCAGAAATTACTCAGCTGAGGAGAGAATGGATAAAATCGATAGAATCAGAGTGATGGCGAGGCCATCTCCATTTGACAAGCTTTTGATGGTTCAATGTTTAAAGCATAAGGGTGAAGTGGTGGCAGTTACAGGTGATGGCACAAACGATGCACCTGCCCTGAAGGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGATGACAATTTCTCTTCTGTGGTCACAGTACTAAGATGGGGAAGATGTGTGTACATAAACATCCAAAGGTTCATTCAGTTTCAGCTCACAGTTAACATTGCTGCACTTGTAATAAACTTTGTGGCAGCAGTTTCTTCTGGTAAAGTGCCTCTTAATGCTGTGCAGCTCTTGTGGGTTAACCTGATCATGGATACTCTTGGAGCCTTGGCCTTGGCCACTGAGGAACCGACCAATGATCGCATGAAGATGCCACCTGTGGGGAGAGTTGAGCCACTTATAACTAAAGCTATGTGGAGGAACCTCATTTCACAGGCATTATATCAGGTGTTTGTGTTACTGATTTTGCAATTCAAAGGAAGATCAATCTTTGATGTGAGTGAGAAGGTGAAGAACACTATTATTTTCAACATTTTTGTCCTCTGCCAAGTTTTCAATGAGTTCAATGCAAGGAAGGTGGAGAAAAAGAACATCTTTGAGGGGCTTGGTAAGAACAAGTTGTTCATAGTAATTGTGGGTTTGACTGTGGTTCTTCAGGTTGTGTTGGTTGAGTTTCTGAAGATGTTTGCGGACACTGAGAGATTGAGTTGGGGCCAATGGGGTGTCTGTGTTTTTTGA 2109 0.45 NQSRQFKKLSSKSGNIGVEVVRGGRRQSVSISEVVVGDIVHLKIGDQVPADGLFLEGHSLKVDESSMSGESDHVNVNADANPFLLSGTKVADGFARMLVTSVGMNTAWGAMIGSTTRELDEETPLQVRLKKLTSAIGKVGLFVAALVLVVSMIRYFTGSTRDDLGNREFVGRKTKFDDVMNAVVGIVAAAMTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMKVSEVRVGKKLIAEGEKLAPSLVQLLKEGIGLNTTGSVYQPQEISLPEISGSPTEKALLSWAVMDLGMDIDEVKQHCEIIHVETFNSEKKRSGIVMREKKGSNRVHTQWKGAAEMILAMCSNYYENTGEIMIMGDEERAQIGNIVKSMATKSLRCIAFAQKSSNGNFRNYSAEERMDKIDRIRVMARPSPFDKLLMVQCLKHKGEVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYINIQRFIQFQLTVNIAALVINFVAAVSSGKVPLNAVQLLWVNLIMDTLGALALATEEPTNDRMKMPPVGRVEPLITKAMWRNLISQALYQVFVLLILQFKGRSIFDVSEKVKNTIIFNIFVLCQVFNEFNARKVEKKNIFEGLGKNKLFIVIVGLTVVLQVVLVEFLKMFADTERLSWGQWGVCVF 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04342 702 Gene3D - 1 93 - -
Vimu11g04342 702 SUPERFAMILY HAD-like 238 567 IPR036412 -
Vimu11g04342 702 Gene3D - 290 433 IPR023299 GO:0000166
Vimu11g04342 702 FunFam Calcium-transporting ATPase 479 702 - -
Vimu11g04342 702 Gene3D - 94 265 - -
Vimu11g04342 702 NCBIfam HAD-IC family P-type ATPase 433 544 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04342 702 NCBIfam HAD-IC family P-type ATPase 184 281 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04342 702 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Vimu11g04342 702 PRINTS P-type cation-transporting ATPase superfamily signature 462 481 - -
Vimu11g04342 702 PRINTS P-type cation-transporting ATPase superfamily signature 486 498 - -
Vimu11g04342 702 PRINTS P-type cation-transporting ATPase superfamily signature 63 77 - -
Vimu11g04342 702 FunFam Calcium-transporting ATPase 2 116 - -
Vimu11g04342 702 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 701 IPR023298 -
Vimu11g04342 702 Pfam E1-E2 ATPase 18 219 - -
Vimu11g04342 702 Pfam haloacid dehalogenase-like hydrolase 433 476 - -
Vimu11g04342 702 ProSitePatterns E1-E2 ATPases phosphorylation site. 242 248 IPR018303 -
Vimu11g04342 702 PANTHER CATION TRANSPORTING ATPASE 2 413 - -
Vimu11g04342 702 Pfam Cation transporting ATPase, C-terminus 547 701 IPR006068 -
Vimu11g04342 702 Pfam Cation transport ATPase (P-type) 293 374 - -
Vimu11g04342 702 SUPERFAMILY Calcium ATPase, transduction domain A 18 112 IPR008250 -
Vimu11g04342 702 Gene3D - 474 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04342 Vimu-Chr11 64763086 64765428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04342 2 701 Primary Pumps ATPases AT1G27770 44.600 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04342 K01537 - gmx:100784119 647.891