Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04339 ATGTCTAAAAATCCAAAAGTTTTCTTTGATATTCTAATTGGAAAGATGAAAGCTGGGCGAGTAGTGATGGAGTTGTTTGCCGATACGACCCCAAAAACAGCTGAAAACTTCAGGGCTCTCTGCACTGGGGAAAAGGGGATTGGACAATCTGGGAAACCTTTGCACTACAAGGGGTCAACATTTCATCGTATTATACCTGAATTTATGTGTCAGGGAGGTGATTTTACGAGAGGGAATGGAACTGGAGGAGAGTCAATCTACGGTTCGAAATTTCAAGATGAGAATTTCAAGTTGAAGCACACTGCCCCTGGTATTCTATCTATGGCTAATGCTGGACCGCATACAAACGGTTCTCAGTTCTTCATATGTACTACAAAGACCCCGTGGCTTGATGGAAAGCATGTCGTGTTTGGAAAAGTTGTTGATGGATACAGCGTGGTGAAGGAGATGGAGAAGGTGGGTTCGGGAAGTGGCAGGACATCGGAAACCGTAGTAATAGAAGACTGTGGCCAGATAGAAGAGAAATGA 528 0.4394 MSKNPKVFFDILIGKMKAGRVVMELFADTTPKTAENFRALCTGEKGIGQSGKPLHYKGSTFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFQDENFKLKHTAPGILSMANAGPHTNGSQFFICTTKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSGSGRTSETVVIEDCGQIEEK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04339 175 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Vimu11g04339 175 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 172 - -
Vimu11g04339 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 171 IPR002130 GO:0000413|GO:0003755
Vimu11g04339 175 PIRSF Peptidylpro_ismrse 1 175 IPR024936 GO:0003755
Vimu11g04339 175 FunFam Peptidyl-prolyl cis-trans isomerase 1 173 - -
Vimu11g04339 175 Gene3D - 1 175 IPR029000 -
Vimu11g04339 175 SUPERFAMILY Cyclophilin-like 3 172 IPR029000 -
Vimu11g04339 175 CDD cyclophilin_ABH_like 5 170 - -
Vimu11g04339 175 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 170 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04339 Vimu-Chr11 64711642 64713799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04339 19 153 U-box Gene Family AT5G67530 49.265 8.09e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04339 K01802 - gmx:100306275 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04339 11 64711642 64713799 Vimu11g04339 11 64711642 64713799 ECH