Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04331 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACTGATGAAGAACTTGTTTTCCAATACCTCAAGTGTAAGGTCTTCTCCCATCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGCATGATCCTTGGGATTTACCTGGGAATTGTGATCCTCAAGAGAGGTATTTTTTCAGTCCGAAGGAAGCAAAGTATAGAAATGGTAATCGCATGAATAGAACAACAAAGTGTGGATATTGGAAGGCAACAGGGTCAGACAAGAGAATTTCATCATCTTCTAATGCATGCAATGGCATTGTGGGAATAAGAAAAACACTGATTTTTTATGAAGGAAAATCACCAAAAGGGTCCAGAACTGACTGGGTCTTGCATGAATATCGTCTTGCTAATGCAGAAACTGCTGCTTGCAACTCATCCCATAACTACGTAAACGAGATTGGAGATTGGGTTTTGTGTCGCTTATCGATGAAGAAAAGAAGTATAGAAAGTGGTGTTGATGAGAAGCAAAGAGTTCATGGTGGTCCAAGATTAATGTTTGATTTTATGATGTTGGGAAAAACAGATTCTTCTACATCGTCATCGTGTTCAAGTTCTAATAACATTATGGAAGTTTCTTCAAATGTATCGGATCATGAAGAAACAAGTGGTAGCTATACCTACTTTTAG 705 0.3858 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSHPLPASIIPEINVCKHDPWDLPGNCDPQERYFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSSNACNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRLANAETAACNSSHNYVNEIGDWVLCRLSMKKRSIESGVDEKQRVHGGPRLMFDFMMLGKTDSSTSSSCSSSNNIMEVSSNVSDHEETSGSYTYF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04331 234 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Vimu11g04331 234 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Vimu11g04331 234 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Vimu11g04331 234 PANTHER NAC TRANSCRIPTION FACTOR 56 14 198 - -
Vimu11g04331 234 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04331 Vimu-Chr11 64636623 64637563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04331 1 173 NAC Transcription Factor Family AT5G13180 61.272 1.86e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g04331 NAM 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04331 - - gmx:100812015 402.905