Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04329 ATGGGTTGCGCCCTTCGAAAGCCGGCGGGTCCTGTCGACAGTCACCGGGGTAAAACTTCGACTTCCGTCGGCGGGAATAATGCCGTTAAGATTCAGGAGAAGCAGGAGACTGTGCACGCCGGCGAACTTTCCGGCGTTATTCTGGCGCCGGAGCGCCGCAGACGTCGACTTGACTCATTCATGACGAGTCATCAAGGGTGGCCGCCGTGGCTGATGGTCGTCGCCGGCGATGCACTTGGAGACTGGACTCCTCGCCGTGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCAAGAGACCTTGTAACTGGGAAAATAGTGGCTTTGAAGAAAGTTAGATTTGACAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCCAATGTTGTGAAGCTTGAAGGGTTGGTTACTTCAAGAATATCATCCAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTGCAGCTGGTGTGGGCGTCAAATTCTCTGAGCCACAGATCAAATGTTATATGAAGCAATTGCTATCTGGGCTTGAGCATTGCCATAGCAGAGGTGTTTTGCACCGTGATATCAAGGGTTCCAATCTGCTCATTGACAACGAAGGAATACTTAAAATTGCAGATTTTGGTTTGGCAACTTTCTATGATCCTAAGCAAAAACATCCTATGACCAGTAGAGTTGTAACTCTTTGGTACCGTCCCCCCGAGCTTCTTCTGGGGGCTACATCCTATGGCATTGGTGTTGAACAGCTGCACAAGATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAGGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCGCAGCAACCTTATAAAAGAAACATCTTAGAAACATTCAAGGATTTCCCTTCTTCTTCATTGCCTCTGATTGAAACTCTTCTTGCAATAGATCCTATTGATCGTGGCACTGCCTCATCTGCTCTAAATAGTGAGTTCTTTACCACTGAGCCATATACTTGTGAACCATCTAGTTTGCCAAAGTATCCTCCTACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAAAAGGCAAAAAACTCTAAGTGGAAAAACTAATGCAGTTGATGGTGCCAAAAGGGTTAGAGTACGCGAGCGTAGTTTGGCCATTCCGGCCCCAGAAGCCAATGCGGAGATCCAATCCAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTCCCACCTCCTCATCAGGACGGAGCTGTTGGATATCCACTTGATGCATCAAACAAAGGAGCTGTTTCATTTGGAGCCACCGAAACATCCACAACCTCTACCATATTTCATTCAAAATCTTCTGGATCTGTTAAAAGTCACGATCCTGCCAAAGACAAAGTTGGGAGAAGTAATACTGCAGACACCCAGATGACTTCACCTTGGAAATTTTTGCGTTCATTCAAGCTATCAACAATTGGTCATTCATTTGATTCATTATTTAGAAGCATTTAA 1584 0.4476 MGCALRKPAGPVDSHRGKTSTSVGGNNAVKIQEKQETVHAGELSGVILAPERRRRRLDSFMTSHQGWPPWLMVVAGDALGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGVGVKFSEPQIKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKHPMTSRVVTLWYRPPELLLGATSYGIGVEQLHKIFKLCGSPSEEYWRKYRLPNATLFKPQQPYKRNILETFKDFPSSSLPLIETLLAIDPIDRGTASSALNSEFFTTEPYTCEPSSLPKYPPTKELDIKLRDEEAKRQKTLSGKTNAVDGAKRVRVRERSLAIPAPEANAEIQSNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSTTSTIFHSKSSGSVKSHDPAKDKVGRSNTADTQMTSPWKFLRSFKLSTIGHSFDSLFRSI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04329 527 Gene3D Transferase(Phosphotransferase) domain 1 272 389 - -
Vimu11g04329 527 Gene3D Transferase(Phosphotransferase) domain 1 173 271 - -
Vimu11g04329 527 Pfam Protein kinase domain 90 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04329 527 MobiDBLite consensus disorder prediction 465 480 - -
Vimu11g04329 527 SMART serkin_6 90 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04329 527 ProSiteProfiles Protein kinase domain profile. 90 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04329 527 Gene3D Phosphorylase Kinase; domain 1 77 172 - -
Vimu11g04329 527 FunFam probable serine/threonine-protein kinase At1g54610 77 172 - -
Vimu11g04329 527 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g04329 527 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Vimu11g04329 527 MobiDBLite consensus disorder prediction 465 499 - -
Vimu11g04329 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vimu11g04329 527 PANTHER CELL DIVISION PROTEIN KINASE 272 353 - -
Vimu11g04329 527 SUPERFAMILY Protein kinase-like (PK-like) 84 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04329 Vimu-Chr11 64621377 64625141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04329 82 383 Core Cell Cycle Gene Families AT5G10270 47.143 1.82e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu11g04329 Pkinase 2.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04329 K08819 - gmx:100789359 910.598