Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04327 ATGGAGGATGGCCGTCAAAATGAAAATGACAGACATAAGATGGAATATTACAGAGGACCGCATGCCATGTGGAATACTGGTTCCCAGCATCAAGTGAAAGAGCCAAATGCACTGGTTATGAATAAGAAGATTAGGTCCATTATGGCAGAAAGGCAGGCTGCTATTCTAGAGCTTGAACTGGAGGCTGCAATATCTGAAAAGAATGAAGCCTTGACTGCTCGAGATGAAGCCATTCGACAGAGGGATGAAGCACTTGTTCAAAGAGATAATGCCATTTTGGAACGGGACAATGCTCTTGCGGCCCTTCAGAGTCGGAGCAGTTCTGTCACCTTCCCTTTTGGCAGTGGAATTCAATGTGGATCAAAACGAATTCATCATTCTTCAAACCATCTGTGTATCGTGTCTGAAGCTGCATACAAAACAAAGGATGCCTCCCCAATTACAGTTGTGCCTTCTGAAGTTGTCAAATCTCATCAAGTAAAGAGAACAAAGGAGAACAAGGTCAATGGTTCTAAGGCTTCAAACCCACCCTACAAAGTAAAGAAAATGGGAGAGGATTTAAACAGGAAGGCTTCTTTTGAAGGTACAAAAATCCGATCTGAATGGCATAGGCAAGATGTTGGCCTGAATTTGGTTACATTTGATGAAACTACCATGCCAGTTCCAGTTTGCACATGTACTGGCATACCACGACAGTGCTACAAATGGGGGAATGGTGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGCATCCATTACCACAGCTTCCAAACAAACGTCATGCTCGCATTGGAGGACGAAAGATGAGTGGAAGTGTTTTTACCAGACTTCTCAGCAGGTTGGTGTTAGAAGGCCATGATTTATCTATACCACTAGATCTTAAGGAGTATTGGGCCAGACATGGAACCAACCGTTACATCACTATCAAGTAG 939 0.4345 MEDGRQNENDRHKMEYYRGPHAMWNTGSQHQVKEPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALTARDEAIRQRDEALVQRDNAILERDNALAALQSRSSSVTFPFGSGIQCGSKRIHHSSNHLCIVSEAAYKTKDASPITVVPSEVVKSHQVKRTKENKVNGSKASNPPYKVKKMGEDLNRKASFEGTKIRSEWHRQDVGLNLVTFDETTMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVLEGHDLSIPLDLKEYWARHGTNRYITIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04327 312 PANTHER - 18 312 IPR010409 -
Vimu11g04327 312 MobiDBLite consensus disorder prediction 158 181 - -
Vimu11g04327 312 SMART GAGA_bind_2 1 312 IPR010409 -
Vimu11g04327 312 Coils Coil 60 80 - -
Vimu11g04327 312 Pfam GAGA binding protein-like family 13 312 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04327 Vimu-Chr11 64604349 64605381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04327 1 312 BBR or BPC Transcription factor family AT2G21240 58.917 7.75e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vimu11g04327 GAGA_bind 1.4e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04327 - - gmx:100813103 535.413