Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04326 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTTCTTCACTCCACAAACAAAAAACTCTCTTCTTTCGGGGACCAACCACCCCTTATAAACACTCCTACCACCCTTTCTTTTCACACTAATCAACAATCTACCATCAGTGACATTGAGCCTTCTGTCATAAAAAACCATAGCCCTCAGACATCCATGGTTGAAGACAAACTTGAAATAGGTGAACAAGTTACTCAAAAGGTTACCTCTATGCAGAAGAAGAGAAGACCAAAAAATGGACCTTCCTTCACCAGCCCTTTATCAATGGACTCGGCAGAAGGGGCAAACAAGAAACAAAAGAAAAGCAATGGTGGTGATCAAGGAGAAAACAAGCCAAAACAAGTGAAGAAGGATCAAAAAAAGGGTCCAGAAGATCCTCCAACGGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGAGTTAGACACCCTCATGGTTAGGCCTGATCAGAAGTTAAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCCATTGCTTTTGCTGACACAACCACCCTGACCACCACTACTAGCAGCTTCCCCACCGCTAATAATGATGACTTTCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATGTCTTCTTCGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAGCGACAAAAGTTTCTTCAACCATATGGATTCGCCAATAATACTGGCTCTTTCAATTAA 990 0.4313 MAAFSSQYYHPFLLHSTNKKLSSFGDQPPLINTPTTLSFHTNQQSTISDIEPSVIKNHSPQTSMVEDKLEIGEQVTQKVTSMQKKRRPKNGPSFTSPLSMDSAEGANKKQKKSNGGDQGENKPKQVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMELDTLMVRPDQKLNNAASPSLLPCVEQCRPNQAIAFADTTTLTTTTSSFPTANNDDFLLDYSSSSFLQPHRPNVFFEYNGGQIWEVDQRQKFLQPYGFANNTGSFN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04326 329 MobiDBLite consensus disorder prediction 105 158 - -
Vimu11g04326 329 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
Vimu11g04326 329 MobiDBLite consensus disorder prediction 76 158 - -
Vimu11g04326 329 FunFam Basic helix-loop-helix transcription factor 147 219 - -
Vimu11g04326 329 Gene3D - 147 218 IPR036638 GO:0046983
Vimu11g04326 329 MobiDBLite consensus disorder prediction 76 103 - -
Vimu11g04326 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 217 IPR036638 GO:0046983
Vimu11g04326 329 CDD bHLH_AtBPE_like 140 216 - -
Vimu11g04326 329 SMART finulus 156 206 IPR011598 GO:0046983
Vimu11g04326 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 247 IPR024097 GO:0006355
Vimu11g04326 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04326 Vimu-Chr11 64586363 64588285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04326 105 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 64.615 1.17e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g04326 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04326 - - pvu:PHAVU_002G283100g 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04326 11 64586363 64588285 Vimu11g04326 11 64586363 64588285 ECH