Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04322 ATGGCTCCCTCAGACCAATCTCGCCACTCTCTTGTTCCTGGATTCTTATACTCATCAAAAATACAGTCCCATTTGAGTAATAACACTAATCATGGGTTGCCATTGCTACCATCATCATCCTCCATTGCATCGCATTCATCATCCTCATCGTTACCAGTGCAGAGTGGGGCCAAGAGTCCTGTGATCCTTTCACCACAAGAGAAAATCCGCTTGTTTTCTCCTTCCTACTATGCAGCATGCAGTGCCGGTGGGGTCTTCAGTTGTGGACTCACCCACATGGCCGTCACTCCTCTCGATCTTGTCAAGTGCAACATGCAGATTGATCCTGTAAAGTACAAGAACATCACATCGGGATTTGGAGTGTTACTGAAGGAGCAGGGTGCTAAAGGTTTCTTCAGGGGATGGGTGCCTACTCTGCTGGGGTACAGTGCTCAAGGAGCATGCAAGTTTGGGTTTTATGAATTCTTCAAGAAGTATTACTCAGACCTTGCAGGACCCGAGAATGCAGTGAAGTACAAAACGATCATATATCTAGCTGGTTCTGCTTCAGCTGAAGTTATTGCTGATATTGCCCTTTGCCCTATGGAGGCTGTCAAAGTTCGTGTACAAACTCAGCCTGGCTTTGCTCGAGGTTTATCAGATGGGTTGCCCAAGTTTATCAAGGCCGAGGGTGCTTCTGGTAGTTTTAGGTTTTGGAATCCAAATCTGATGAGTTTGTCTTCATATCCAGGTTGTATAAAGTCTATAACATTGGCATTAATTTTGTATGGGACGCAAGAGTTTGAAGCTAGCATTACGGAATTCCAAACCGTTGTGGAGATGATCTACAAAAACGTCATCCCAGTCCCGAAGGAGAAGTGCAGCAAAAATAAACAGCTTGGAGTGAGTTTTGCAGCTGGATACATAGCAGGTGTGCTGTGTGCAGTTGTCTCACATCCTGCTGACAACCTCGTTTCTTTTCTCAACAATGCCAAGGGAGCCACTATTGGTGATGCTGTGAAGAAAATTGGGGTGGTAGGTCTTTTCACTCGTGGCCTTCCTCTTCGTATAGTTATGATTGGAACACTAACTGGAGCACAGTGGGGACTCTATGATTCATTTAAAGTATTTGTAGGACTGCCTACTACTGGAGGAAGTGCTCCTGCACCTGTTAAGTAG 1158 0.4542 MAPSDQSRHSLVPGFLYSSKIQSHLSNNTNHGLPLLPSSSSIASHSSSSSLPVQSGAKSPVILSPQEKIRLFSPSYYAACSAGGVFSCGLTHMAVTPLDLVKCNMQIDPVKYKNITSGFGVLLKEQGAKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPENAVKYKTIIYLAGSASAEVIADIALCPMEAVKVRVQTQPGFARGLSDGLPKFIKAEGASGSFRFWNPNLMSLSSYPGCIKSITLALILYGTQEFEASITEFQTVVEMIYKNVIPVPKEKCSKNKQLGVSFAAGYIAGVLCAVVSHPADNLVSFLNNAKGATIGDAVKKIGVVGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVFVGLPTTGGSAPAPVK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04322 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 291 370 IPR018108 -
Vimu11g04322 385 Gene3D Mitochondrial carrier domain 246 383 IPR023395 -
Vimu11g04322 385 SUPERFAMILY Mitochondrial carrier 77 365 IPR023395 -
Vimu11g04322 385 Gene3D Mitochondrial carrier domain 75 245 IPR023395 -
Vimu11g04322 385 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 54 381 IPR044677 GO:0005315|GO:1990547
Vimu11g04322 385 FunFam Phosphate carrier protein, mitochondrial 169 372 - -
Vimu11g04322 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 75 159 IPR018108 -
Vimu11g04322 385 Pfam Mitochondrial carrier protein 77 161 IPR018108 -
Vimu11g04322 385 Pfam Mitochondrial carrier protein 177 244 IPR018108 -
Vimu11g04322 385 FunFam Phosphate carrier protein, mitochondrial 62 166 - -
Vimu11g04322 385 ProSiteProfiles Solute carrier (Solcar) repeat profile. 172 256 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04322 Vimu-Chr11 64552985 64555247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04322 5 383 Chloroplast and Mitochondria Gene Families AT5G14040 64.962 1.47e-172 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04322 K15102 - gmx:100800530 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04322 11 64552985 64555247 Vimu11g04322 11 64552985 64555247 ECH