Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04318 ATGTTTTGCAATGCATTTCATTGTGATTGTGATCTGCACCGATCGGTGGCGGGAAAAGGCCAAGAGAGGGAATTGGAACTCGAAAGTGACGAGTCTGAGGCTGAGATTGAGGCCCCATTGCCTCTAACTGTGACCTCTCGGGCTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCAAAACATCGTCCTTCTGGCTTCCCTCACCAAGTGAAGTTTGTGACTGTTGCTAATGTTCATCATTTGTGGCTCAGCGTTAGGGAACGGTTGGAGGATCCAAAATTGGAGCTGCACCCTGATCAGACAGAAATTAGATTGTGGGAGAGACTTGGGAAGGCTGCAATGTTGGACATTGAGTCGAGCTCTTTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACGATAGTAGCAATGAACAATCCGAAGATGAGATGAACAAAGCTCTCGAGTCAGATATGATGGATAAAGTAAATGTGGTTCTGAGCATGTTGATAACAGTGATTGTTTTGCTGGTAACTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTTTTCAATCTGCCTGGGAATGCCGATATTTATCCAAAAGAAGCAGCAGCAGTTATAAAGATATCACCATCAAGAATGGCAACACAGTCTGAACGCCTTGGCTACGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGGGTAGAGTCATTCACAATACCAGTCTTGAATGGCAACAAATAAAGGAAGCTGCGGAAAGAGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGCGAGGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTCAGCCGTTATGTACACGGTTCACCCTTGCTTGAAAGCTCTACTGCATTCAAGTCAAAGGAATCAGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTGCTGATGCTGGACCTAGTCATCAGAAATGAAGATAGGTTGCCTTGCCGTGAGCTTAGATGGCGTGGGAATCCAGCGAATTTGTTGTTGGCTGGAAAGACTATCTGTGCAAATATAGATGTGCTAGAAGCCGCTGTTGATTCTGCAATTGACCGATATAGACCAAAGATGATATGTGCTTTTCAGAAAGAAAGAAGGTCAACTTCAGTAGATTGCAGACTCGATTCTCACGATCCTGGTTTGATATCACATTCCCCTGATCTTTCAGATATCTCAGAATCTCCACTATCTCTTGTCATCAACCATATAAGTCAAACATCTGAAGAATCACTGTCTCCCGACATTAACATAATAGCCATTGATTCTGGTGTACCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGATTGAGTTGTTACTCAACAGTTCTGAATTTGCCTCAAACCTGATATATGATGTAACTGGAGGGAAATTAGGATGTCCTCCATCAGAAGACATGGACAAAACTGATATATATGCGAACGACGTAATGTCTGTAGTTCATGCGTTTCGCGCTGGTTTCCGCGCTGCTCTCAGGGATCTGCAGGGATTTCACATATTCCTACTCACACTTCACCAAAGACTTGATACCTTATTACGATCATTTATGAACATTATGAGCAAAATATCTTTGGGAGAATTTGACAAAGAAGATGCTGTAGTTCCTGACTCACCTTCACTAGCAGTTGGTGGGCATTTTTACTCGCCATCATCTAAGGAGAGGCTTGGTAATGATAACCATCATGATTTGATTGATTCAGAACCACAGAGAACTGCTTCAAAAGCATCACCTTCAGGCAACAGAGATTGCAGTGACTTTACTCCAACCCCAAAAGAATCTTGCCATGGAAAGTTCTATAGAGGAAATGGGGAACCACTGCGTAGTCTCCGTTTGACTACTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCCAGTAGAGAATTGGAACAATGGAATGAAATGCTTAAAAGCGATGCCATCAAACTATGCCAGGATAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACTGTGCTGTTGACGCATATGAACTTAAGGTACGACTTGAGCATATTATCGAGAGAATTGCATTGATATCAGATGCTGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCATTGGCTGCAAGATCTGTTTACACACTGCAGTACTTGGGAATCACAAATATTTTATGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCCTGATCTATTTGAGTATAAGAATTTCTCTGTATGTGATAGTGATGATTACAACATCAGCGGCATATTTGAAGAAGCATGTGATTTGATAGATCATGTTGAACAAACAGGTCAAAAAGTCTTAGTTCACTGCTTTGAGGGGAAAAGCCGAAGTGTTACATTGGTCCTCGCATACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAAGCTTTGAAGCGAGTTCACTGTCGAGCACAACCCAACGACGGTTTTGCAAAGACCTTATTGGACTTAGATCAGAAACTACATGGAAAGGTTTCGATGGAATGGCATCAGCGAAAACCAATGATGAAAGTTTGCCCAATATGTGGGAAGAATGCTGGGCTAAGCAGTAGCTCACTCAAGCTCCATCTGCAGAAATCACATAGAAAGCTGTCATCTGGAAGCGTTGATAGCGCCATGACTATGGAAATCGAGAAAGCTTTGACAGCTTTGAAGATTAGCCGTGGAGGGAGCGTCAGCCCCACACAAAGACAATCTCATCCAATAATAGATCAATAG 2859 0.4285 MFCNAFHCDCDLHRSVAGKGQERELELESDESEAEIEAPLPLTVTSRALYMLGDITAGPAFKFTQWLQLVRKRTAKHRPSGFPHQVKFVTVANVHHLWLSVRERLEDPKLELHPDQTEIRLWERLGKAAMLDIESSSFSWDMLSSLHHTEHDSSNEQSEDEMNKALESDMMDKVNVVLSMLITVIVLLVTVNSGGVVFFAFFNLPGNADIYPKEAAAVIKISPSRMATQSERLGYEFAKWLGVQTPQGRVIHNTSLEWQQIKEAAERAREAANSEGDEIGEVTCFELLEALELSRYVHGSPLLESSTAFKSKESAERTSEALGRVLMLDLVIRNEDRLPCRELRWRGNPANLLLAGKTICANIDVLEAAVDSAIDRYRPKMICAFQKERRSTSVDCRLDSHDPGLISHSPDLSDISESPLSLVINHISQTSEESLSPDINIIAIDSGVPRRPPAGKRANDQVNYPKLIELLLNSSEFASNLIYDVTGGKLGCPPSEDMDKTDIYANDVMSVVHAFRAGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNIMSKISLGEFDKEDAVVPDSPSLAVGGHFYSPSSKERLGNDNHHDLIDSEPQRTASKASPSGNRDCSDFTPTPKESCHGKFYRGNGEPLRSLRLTTKLRDFHKFAKVDAESSRELEQWNEMLKSDAIKLCQDNNFNPGFFEGSDNNCAVDAYELKVRLEHIIERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYPDLFEYKNFSVCDSDDYNISGIFEEACDLIDHVEQTGQKVLVHCFEGKSRSVTLVLAYLMLRKKYTLLEAWQALKRVHCRAQPNDGFAKTLLDLDQKLHGKVSMEWHQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIEKALTALKISRGGSVSPTQRQSHPIIDQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04318 952 MobiDBLite consensus disorder prediction 581 620 - -
Vimu11g04318 952 CDD DSP 726 863 - -
Vimu11g04318 952 Pfam Actin-fragmin kinase, catalytic 118 448 IPR015275 -
Vimu11g04318 952 Pfam Dual specificity phosphatase, catalytic domain 746 866 IPR000340 GO:0008138|GO:0016311
Vimu11g04318 952 Gene3D Protein tyrosine phosphatase superfamily 702 871 IPR029021 -
Vimu11g04318 952 Gene3D - 300 400 IPR036940 -
Vimu11g04318 952 SMART dsp_5 725 867 IPR020422 GO:0006470|GO:0008138
Vimu11g04318 952 ProSiteProfiles Dual specificity protein phosphatase domain profile. 725 870 IPR020422 GO:0006470|GO:0008138
Vimu11g04318 952 MobiDBLite consensus disorder prediction 601 619 - -
Vimu11g04318 952 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 725 870 IPR029021 -
Vimu11g04318 952 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 794 846 IPR000387 GO:0016311|GO:0016791
Vimu11g04318 952 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 29 951 IPR035010 GO:0004721|GO:0009737|GO:0043622
Vimu11g04318 952 MobiDBLite consensus disorder prediction 586 600 - -
Vimu11g04318 952 SUPERFAMILY Protein kinase-like (PK-like) 110 461 IPR011009 -
Vimu11g04318 952 FunFam Dual specificity protein phosphatase PHS1 697 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04318 Vimu-Chr11 64534852 64541179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04318 19 948 Protein tyrosine phosphatase (PTP) family AT5G23720 59.937 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04318 K14165 - gmx:100791993 1501.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04318 11 64534852 64541179 Vimu11g04318 11 64534852 64541179 ECH