Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04314 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCATGGTCAAACCCAAACGCCAACGAGCTAAGCTGCTTCTACAAACCCTTCTCCGACATCCATGAAGAATGGCACGTGCCCAACAACACCACCCAGATTCACTCACATGTCACCAACTTCGCTCATAACATGTTACTCCATCAACACCAACCGTTACACTCTTTCTCTTCTTCCACCAGCCTTCACCTATCTCAAGGGCACAACTTCTTCACCCCCAAACCCTTCTTTTACCCGTTGGATCACGCCTTTCGCGCGGGTTCCGATGTGGGGTTTCTTGATCCTCATGATTTGAACAAGGTTCATCATGGTGGTGTCTTCTCCAGCTCAAATGATAATAACCAGTTGGCCCTTCCAAATTTAGCAACCATGTGTGCATTGCCTCCCCAACTAGAGGGTGTTGGATTTCCCGGATTCAAGAATATCGTTGACTCTGATCATGTGGAGGGTTCAAGAAAGCCTTTGCTTCTGAGCACTTCCAACGTACTGAAACCCCTTGAATCCTTCCCTCCATCAGGTGTACAACCTACACTTTTTCAGAAGCGAGCAGCACTAAGGAAAAGCATGGAAGATAACTGCAAAGGCAAGAGTAAAGGGAATAGCGATAGTAGCAAGAGGAAGACTTGTAATAATGGAGAAGGTGATGAAGGGTCCGGGTTGAATCTTGATTCTGATGAGAGTGGTGAGATGGAAGAGAGTGGAAGGAACGGCGGAAACAGCTCGAATGCGAATAGCACCATGGACAGAGCTTCAATACTGGGGGATGCAGTAGAGTATTTGAAGGAACTTCTTCAAAGGATTGGTGACCTTCACAATGAATTGGAGTCAACAACACCAGCTGGTTCTTCATTGACTTCAAGCTTTCTTAATCCCTTGACGCCCAAATTACCAACAAGTATGCAAGAAGAACTTTGTCTCAGCTCATTGCCAAGCCCTAATGGCCAACCTGTTGAGGTTGGGTTGAGTGAAGGAGGTGTAAAGATTCAGATGTGTTGTGAGAGGAAACCTGGTCTCTTGCTGTGTACCATGAGGGCTCTCGACAACCTTGGCATAGACATCCACCAAGCAGTCATCACCTATTTCAATGGATTTGCCATGGATATTCTCCGAGCTCAGATATGTAGCGAAGGTCAAGATGTCCGTCCAGAGCAAATCAAAGCAGTTCTATTAGATTCGGCTGGCTACCATGGCATGATCTAG 1242 0.4638 MMSGWMQDTEEQNSASWSNPNANELSCFYKPFSDIHEEWHVPNNTTQIHSHVTNFAHNMLLHQHQPLHSFSSSTSLHLSQGHNFFTPKPFFYPLDHAFRAGSDVGFLDPHDLNKVHHGGVFSSSNDNNQLALPNLATMCALPPQLEGVGFPGFKNIVDSDHVEGSRKPLLLSTSNVLKPLESFPPSGVQPTLFQKRAALRKSMEDNCKGKSKGNSDSSKRKTCNNGEGDEGSGLNLDSDESGEMEESGRNGGNSSNANSTMDRASILGDAVEYLKELLQRIGDLHNELESTTPAGSSLTSSFLNPLTPKLPTSMQEELCLSSLPSPNGQPVEVGLSEGGVKIQMCCERKPGLLLCTMRALDNLGIDIHQAVITYFNGFAMDILRAQICSEGQDVRPEQIKAVLLDSAGYHGMI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04314 413 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 259 409 - -
Vimu11g04314 413 MobiDBLite consensus disorder prediction 202 226 - -
Vimu11g04314 413 CDD ACT_UUR-ACR-like 342 402 - -
Vimu11g04314 413 SUPERFAMILY ACT-like 338 412 IPR045865 -
Vimu11g04314 413 MobiDBLite consensus disorder prediction 202 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04314 Vimu-Chr11 64512363 64515203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04314 93 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.663 1.49e-61 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04314 - - var:108344591 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04314 11 64512363 64515203 Vimu10g01622 10 19915248 19917806 PCT