Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04313 ATGCACCCTCGTTGCAAATGCATATCGCTGCCCGTTCACAGCAAGACAACGCCATTTCCCAATAAAAACAGTGCAACTTTCCCGCCACCGTCAAGACAAACGGCGTTACATGCCTCGTCCAATAACTCATCCGCGTCTGTTAACGTCGTTACAATAGACGTCTTTCACTGTCCCAGGAGCCGCCAAAGAGATCGCGCTGCCTTGCCAGGGAAAACAATCCCACCTGGTGTAGCCGGTTCCCAACGGGGTTCAACCGAAGCGGAGGCTCCGATCTTGCCATGTGGTGTGCGAGAGATCTGTGAGGAGCTTCAACGGAAAAAAATGGCGTCGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGTAAAGGAGAGAACAGTTCTGGTGTTTTCAACGGCTGCAACGATGTTAGGAACGCTGGAGGAGAGCTTCAGAATGCTTCTTCCTCATCATCAGCCAGAGACGCGGAAACAGCGCTTTACAGGGAGCTATGGCACGCGTGCGCAGGTCCGCTGGTGACGGTGCCTAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACATATTGAGCAGGTGAGTGTTCTTCCACCGGTGGAAGCGTCGACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCGAAGATCCTTTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACAGACGAGGTGTTTGCTCAAGTAACCTTACTTCCTGAGCCAAATCAAGACGAGAATGCGGTGGAGAAGGAGGGTCCTCCGGCACCGCCTCCCCGGTTTCACGTCCATTCGTTTTGTAAAACGCTTACGGCTTCTGATACGAGTACGCACGGTGGATTTTCGGTGTTGAGACGACATGCTGATGAATGCCTTCCCCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTGGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGCGTTGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAACGTTCCGTCCTCGGTTATCTCGAGCCACAGTATGCATCTTGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGAACCATGTTTACCGTGTATTACAAACCTAGCATTTACAGTAATGTCCAACTTATTCACAGGACCAGTCCAGCCGAATTTATAGTTCCGTATGATCAATACATGGAGTCCCTAAAAAACAATTACACCATCGGGATGCGCTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACCGGCACCATTGTGGGAATAGAAGATGCTGATCAAAAAAGGTGGCCTAACTCGAAATGGAGAAGCCTTAAGGTGAGGTGGGATGAAACTTCTAACGTACCTCGTCCTGAGAGAGTTTCCCAATGGAAAATAGAGCCGGCTCTCGCTCCTCCTGCTCTTAACCCTTTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCTGATTCCTCTGTTCTTACCCGTGAAGCATCATCTAAAGTGAGTGTGGACCCTTTGCCAGCAAGTGGATTTCAAAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGTAAATTTTGCCGAAAGCAATGAATCTGATACGGCAGAGAAGTCTGCATGGTCATCTGCTGCAGACGATGAAAAGATTGATGTTGTTTCCACCTCTAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTGCTTTCTGGCTTTGGGGTTCATGGAGATCAGACTTCCCATCCATCTTTGGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTATTTCGACCGCGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGTAGTGCCATCTAGTCTATCACTCAATCTATTGGACTCTAATACAAAAGTCTCTGCTCAAGGTGGTGATACAACTTCTCAAGTTCGAGGGAATTTGAGATTTAGCAGTGCATTTTGTGACTATACTGTGCTTCATGGACACAAAGTTGATCATTCACACGGAAACTTTTTGATGCCACCACCACTGTCAACTCAATATGAGAGCCCTCGTTCTAGAGAACTGTTACCTAAACCAATATCAGGAAAACCTTCTGAGGTATCAAAACCGAAGGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCTCTGGACCCTTCTGTATCACAAAGGAATGTTGCAATCGAGCCAGTTGGTCACATGCATACTACACATCAACAGCGCACATATGAAAATGACCCAAAGTTTGAGAATTCAAGGGGATTGAAACCCGCTGATGGTGTGCTGATTGACGACCATGAAAAGCCTACGCAAACTTCTCAGCCACATCTGAAAGATGTTCAACCCAAATCTAATACTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAAGGGATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGTGCATATGATGAATTAATTGCTGAATTGGATGAGCTATTTGAATTCGGAGGTGAATTAACCTCTCCCCAAAAAGATTGGCTTATTGTCTACACTGATAACGAAGGCGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCGATGGTACGAAAAATTTATATCTATCCAAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTAAGTTCAAAGAACGAAGAGAATCAATCGGCTAGTGAAGGTAACTTCATAATTTATGGTGTTCCCCATGTAAGAATTTTGAATCCAGTTTACCAGGAGAATCTCATGAATATGGATGGCATGAAGGAGTATCCATCCAATTTTGGACCTCGTCGTTGGAGTAGTAGTAGTAGTATATATATGCCTTCCCTTGCGGCCATTACCGTCATGTCACGGGCGGTGTGGATTGAATTCGAAGTCATGTCAGGAGAGAAGAAAGTGGACACTTTGGGTCTGGAAATCTTTGATGGAGGATTTGAAAATTCTTTAGTGAAATGTATTTGTGGTTATTTGTGA 3174 0.4666 MHPRCKCISLPVHSKTTPFPNKNSATFPPPSRQTALHASSNNSSASVNVVTIDVFHCPRSRQRDRAALPGKTIPPGVAGSQRGSTEAEAPILPCGVREICEELQRKKMASSEVSIKGNSVNGKGENSSGVFNGCNDVRNAGGELQNASSSSSARDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVSVLPPVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPSIYSNVQLIHRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADQKRWPNSKWRSLKVRWDETSNVPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPASGFQRVLQGQELSTLRVNFAESNESDTAEKSAWSSAADDEKIDVVSTSRRYGSESWMSMGRHEPTYPDLLSGFGVHGDQTSHPSLVDQNGPVANLSRKHYFDREGKHNVLSPWPVVPSSLSLNLLDSNTKVSAQGGDTTSQVRGNLRFSSAFCDYTVLHGHKVDHSHGNFLMPPPLSTQYESPRSRELLPKPISGKPSEVSKPKDSDCKLFGISLLSSPIALDPSVSQRNVAIEPVGHMHTTHQQRTYENDPKFENSRGLKPADGVLIDDHEKPTQTSQPHLKDVQPKSNTGSARSCTKVHKKGIALGRSVDLTKFSAYDELIAELDELFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGNFIIYGVPHVRILNPVYQENLMNMDGMKEYPSNFGPRRWSSSSSIYMPSLAAITVMSRAVWIEFEVMSGEKKVDTLGLEIFDGGFENSLVKCICGYL 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04313 1057 FunFam Auxin response factor 270 374 - -
Vimu11g04313 1057 Gene3D - 269 374 IPR015300 -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 516 532 - -
Vimu11g04313 1057 Gene3D - 445 515 - -
Vimu11g04313 1057 FunFam Auxin response factor 849 943 - -
Vimu11g04313 1057 ProSiteProfiles PB1 domain profile. 854 936 IPR000270 GO:0005515
Vimu11g04313 1057 CDD B3_DNA 270 372 IPR003340 GO:0003677
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 61 86 - -
Vimu11g04313 1057 Gene3D - 850 943 - -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 18 43 - -
Vimu11g04313 1057 Pfam Auxin response factor 398 490 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu11g04313 1057 Pfam AUX/IAA family 900 941 IPR033389 -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 534 549 - -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 798 856 - -
Vimu11g04313 1057 ProSiteProfiles B3 DNA-binding domain profile. 272 374 IPR003340 GO:0003677
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 803 837 - -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 516 555 - -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 838 856 - -
Vimu11g04313 1057 MobiDBLite consensus disorder prediction 733 763 - -
Vimu11g04313 1057 Pfam B3 DNA binding domain 272 373 IPR003340 GO:0003677
Vimu11g04313 1057 FunFam Auxin response factor 445 517 - -
Vimu11g04313 1057 SMART B3_2 272 374 IPR003340 GO:0003677
Vimu11g04313 1057 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 158 943 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu11g04313 1057 SUPERFAMILY CAD & PB1 domains 855 931 - -
Vimu11g04313 1057 SUPERFAMILY DNA-binding pseudobarrel domain 268 401 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04313 Vimu-Chr11 64506200 64511585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04313 108 961 B3 DNA Binding Superfamily AT5G62000 63.864 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu11g04313 AUX_IAA 2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04313 - - gmx:100815956 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04313 11 64506200 64511585 Vimu10g01623 10 19919256 19924041 PCT