Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04312 ATGCATTTCGCGAATCTCGATGACACTCCGATGTTCCGTCAACAGATGCAGTGTTTGGAGGAAAGTGCAGAATCGTTGCGTGCGAGATGCTGCAAGTTCTATAAAGGATGTCGAAAGTATATGGAAGGTCTTGGAGAGGCATATGATGGGGACATTGCATTTGCAAGTGCCATAGAAAACTTCGGAGGCGGGCAGAATGATCCTCATTTTATTGCTTTGGGAGGACCTGTTTTGACCAAATATACTCTAGCATTGAGAGAAATCAGTACATACAAGGAACTGCTGCGGTTACAAGAAGATGAGAGTTTGAGCCACAAGGAAGGAAATTTTACAAATCATGTTAGTCAAGAAGATAAAATTGCTCAGGTAGAGTACATTTTCAATCATCGGTTACAACCGATTGTCAATGTTGACATCCATGAAGTCAAGGAAGCTCGCAAACGTTTTGATAAATCCTCCCTTGTATATGATCAGGCACGTGAAAAATTTATGTCACTCAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTGAAGAGGAACTGCAGGAGGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGGCACTCTTAATAATGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACTGGAATTATGGATGCTCACCTTCGATATTTTCAACAGGGGTATCAGCTATTGCATCAGATGGAACCTTTCATCACCGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTTCAATAACGAGCAGATTCAACTTTATCAAAGAATGCAAGACTACAAGAAACATGCTTATGAAGAAAGCAGGTTGTCGTTGAGTGGTCCCTGTGGTTCTCTTCTTGGAGACTCTGCACATCCATTTTCGAGGATATCAAATGAGGCAGCAGATGTAGTAATGGAATCTGCTGCGAATGGAAAGGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCATTGAAAATGGTTCTGGGATTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGCGTCCATGATGAAAGATCCATAGCACGTCATACAGTTAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCTACAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCTACCTTGTTGACTGTCCAGACACTGGGAACGCCTCCCTCAGCTGACTCAGAAAACGACGACTCTCACTCTGATGACAATATTGATAAGTCAGAAAGTTTTCCAGATGATGATCATGCTTTGAGAGCGAAATCTACATTGAATAAAACCACCCGTAATAAGCACTTACGTTCGTCTAGAAGTATGAACTTACATACACACACTGTGAGAATTGAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTCATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCGCTGACACTTGATGTTAAAGTTTGGGATTCCTCAGTCTTAAGTATGCTTAAATCACTAGGCAATCTTTTTTCAAACTCAGTTTGGGAGGAGTTGTTGCATTCACAGGGTAATTTGGAAACTGTTGACACCCTTGCTAGTTCATCCAAGGAAAATGAAGAGGAGATCTTCCATGCAAGAAAGCCAAAACATGATGATCCGATTTTAGTAAAGGAAAGGTTCATTCATGCAAAGTATTATGAGAAAATATTTATTCCCCGGATCACGGAAAGCCACCCTATCCATTCACTAGCGCAACAGTTGCAGGAAAGCATCTGTGCAAATGACAAAAAAGCAGTGTACCAGCTTATTGTTAAGTCGAATGTTGACATCAATGCCATCGGTTTGTCTGGTGACACTCTGGACATGGCTTCAAGTAATTCAAACATTGCATCTCAAAGTGAAAATCAGCTCGTTGAGGACGTAAAAGATGGCTCTAGCGCGCTTCACCTGGCTTGCCTAAATAGTGACATTGGCATGGTGGAGTTACTCCTACAGCTTGGGGCAGATATAAATGCTTCCGATTCTAGAGGTCGGACACCACTTCATTGTTCTATTATTGGACGGAAGAATGCAGCTGCAAAAGTGCTTATCTCGAGGGGAGCCAATACATACGTTGCAGATAAAGAAGGCAACACTCCTATTAAGCTTGCATCAGAATCCAACTGCGTTGACAAAGAAATTATCAATCTTTTGACAAGCAGATAA 2343 0.4127 MHFANLDDTPMFRQQMQCLEESAESLRARCCKFYKGCRKYMEGLGEAYDGDIAFASAIENFGGGQNDPHFIALGGPVLTKYTLALREISTYKELLRLQEDESLSHKEGNFTNHVSQEDKIAQVEYIFNHRLQPIVNVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIEEELQEARASFEEARFNLVGTLNNVEVKKRFEFLEAVTGIMDAHLRYFQQGYQLLHQMEPFITEIMDYVHQSRENFNNEQIQLYQRMQDYKKHAYEESRLSLSGPCGSLLGDSAHPFSRISNEAADVVMESAANGKGSNQPSPKRNSGIENGSGILSRWLSSHYHGGVHDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAENAVDQMDWMQKINGVIATLLTVQTLGTPPSADSENDDSHSDDNIDKSESFPDDDHALRAKSTLNKTTRNKHLRSSRSMNLHTHTVRIEKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMLKSLGNLFSNSVWEELLHSQGNLETVDTLASSSKENEEEIFHARKPKHDDPILVKERFIHAKYYEKIFIPRITESHPIHSLAQQLQESICANDKKAVYQLIVKSNVDINAIGLSGDTLDMASSNSNIASQSENQLVEDVKDGSSALHLACLNSDIGMVELLLQLGADINASDSRGRTPLHCSIIGRKNAAAKVLISRGANTYVADKEGNTPIKLASESNCVDKEIINLLTSR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04312 780 CDD BAR_SFC_plant 15 239 IPR035670 -
Vimu11g04312 780 MobiDBLite consensus disorder prediction 417 469 - -
Vimu11g04312 780 ProSiteProfiles Ankyrin repeat region circular profile. 689 720 - -
Vimu11g04312 780 Gene3D Arf GTPase activating protein 458 621 IPR038508 -
Vimu11g04312 780 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Vimu11g04312 780 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Vimu11g04312 780 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Vimu11g04312 780 Pfam Putative GTPase activating protein for Arf 482 613 IPR001164 GO:0005096
Vimu11g04312 780 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Vimu11g04312 780 ProSiteProfiles PH domain profile. 374 408 IPR001849 -
Vimu11g04312 780 MobiDBLite consensus disorder prediction 425 452 - -
Vimu11g04312 780 SMART 5bar 5 242 IPR004148 GO:0005515|GO:0005737
Vimu11g04312 780 SUPERFAMILY ArfGap/RecO-like zinc finger 478 618 IPR037278 -
Vimu11g04312 780 Gene3D Arfaptin homology (AH) domain/BAR domain 4 274 IPR027267 -
Vimu11g04312 780 PANTHER CENTAURIN/ARF 5 778 IPR045258 GO:0005096
Vimu11g04312 780 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 624 IPR001164 GO:0005096
Vimu11g04312 780 ProSiteProfiles Ankyrin repeat profile. 722 754 IPR002110 GO:0005515
Vimu11g04312 780 Gene3D - 622 780 IPR036770 -
Vimu11g04312 780 MobiDBLite consensus disorder prediction 310 329 - -
Vimu11g04312 780 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 461 625 - -
Vimu11g04312 780 Pfam BAR domain of APPL family 6 258 IPR004148 GO:0005515|GO:0005737
Vimu11g04312 780 SMART ANK_2a 689 718 IPR002110 GO:0005515
Vimu11g04312 780 SMART ANK_2a 722 751 IPR002110 GO:0005515
Vimu11g04312 780 SUPERFAMILY Ankyrin repeat 636 780 IPR036770 -
Vimu11g04312 780 SUPERFAMILY PH domain-like 338 411 - -
Vimu11g04312 780 MobiDBLite consensus disorder prediction 311 329 - -
Vimu11g04312 780 Pfam Ankyrin repeats (many copies) 691 738 IPR002110 GO:0005515
Vimu11g04312 780 CDD ArfGap 482 611 - -
Vimu11g04312 780 SUPERFAMILY BAR/IMD domain-like 6 270 IPR027267 -
Vimu11g04312 780 ProSiteProfiles Ankyrin repeat region circular profile. 722 754 - -
Vimu11g04312 780 SMART arf_gap_3 479 624 IPR001164 GO:0005096
Vimu11g04312 780 Gene3D - 335 415 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04312 Vimu-Chr11 64473219 64490481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04312 477 617 C2H2 Transcription Factor Family AT3G07940 39.007 1.42e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04312 K12489 - gmx:100792517 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04312 11 64473219 64490481 Vimu11g04312 11 64473219 64490481 ECH
Vimu11g04312 11 64473219 64490481 Vimu10g01632 10 20421708 20429738 PCT