Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04310 ATGGCCGGAACTTCGTCTTCTGCAATTGACATCCCTGAATTTCCATCAAGTCTTAATGTCCTTGTCATTGATACTGATTCCGGAGTTCTTGAATTCATGGAGAAATCATGCAAAGAAAAGTCTCATCAAGCTGTAATATGCTCTGAATCTTCAATGGCTGTGGATGTTTTGCGGAAAGAAGAAATAGAGATTCATTTGATCGTCATGGAGCGTAATATGCCAATGATGAATGGCTTTGAATTTCTGCAATTTCTCGATGAAGAAGGATTTGATATTGCTTTTGTCATGATGTCTGATGATATTACTCGGTCTTCCATGAGAAAGGCTTTCCAATTTGGAGCTATCCACTATTTCATAAAACCCTTCGGTGATCGGTTGTTAGATATGTGGCCACCTTTCTTAAAGCATTATTACGACAGGCGTCACTTAGAAGATGATGAGACAGGTGATGGAGAAGCCAAAGCCAATGATACCCTCCACAAGAAAGATTAA 492 0.3943 MAGTSSSAIDIPEFPSSLNVLVIDTDSGVLEFMEKSCKEKSHQAVICSESSMAVDVLRKEEIEIHLIVMERNMPMMNGFEFLQFLDEEGFDIAFVMMSDDITRSSMRKAFQFGAIHYFIKPFGDRLLDMWPPFLKHYYDRRHLEDDETGDGEAKANDTLHKKD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04310 163 SMART REC_2 18 130 IPR001789 GO:0000160
Vimu11g04310 163 SUPERFAMILY CheY-like 16 127 IPR011006 -
Vimu11g04310 163 Gene3D - 17 155 - -
Vimu11g04310 163 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vimu11g04310 163 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vimu11g04310 163 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 135 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04310 Vimu-Chr11 64458347 64459039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04310 2 157 Response Regulator Gene Family AT4G16110 26.752 5.26e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04310 Response_reg 1e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04310 - K11526 vra:106769483 221.861