Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04301 ATGCCTTTTCAAATCATGGATCGCAGGGGCGTTTCTGCATCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGATTACGGAAACCGATATCCATTAATGATCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGAAGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGCTTGCTGATGTCCCAGGCTAATCTACCTGGGGATAGTATAGATTCCAAGGAATCATTGAATTATCGCCCCAAATCATTCTCTGATGCATCTCTGCAGTCGGCATCTACCTCATATGGCTTAAATGGGAACAAAATTGTGAGCAATGCTGGCCCCTGTGAAAGTAGTTTATTCTCGAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTATTTGGAAATGATGTTCAGTCTGATAGGACTATTGCTGCTGGTTTCCCGGAGGAACCATGTAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAATTGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGTATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATAATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGCTTTTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAACGTTGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGGTTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGCTATCTGGACTTGATTCATCTGTTTTAAATGATGAGCTTAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATAAATCATCACAAATTTATTGAGTTTTATGATGTCCGAGCTGCCGAATCTGCTCTTCGTGCTTTGAATAAGATTGACATTGCCGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCACATAAGGGCCAAGATGAGCGAGATTTGGGTCAGAGTATTATGGACAGTTTACCATTAAGACCAAAGGCAACAGGGTCTTCTGGAATAATTGGATCTGGGGTCTTGGAAAATGGATATAATCAGAGGTTTCAATCTGCAGTGCGACAACCTATTAATGCATTTATGGATAATTCATTCATTAATGTGAACAACTCCAGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAGGTGTCTGGAGTTTCTGAGTCTAATGGCTATATCGATGCAATGAAATTTGCATCTAGTTCAAGATTTCATCCTCATTCCTTACCTGAGTACCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGGCTAACAATATGGGTGCTGGAGCTACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACATAGCAGAATTTAACGCGGGAGGAAATGGCATACGCCCACATGGACTTTATCATATGTGGAACAGCACCAATTTGCAACAACAACCTTCATCGAATAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCCTGTTCTCCAAACCTTCCACAGATGTCAAGCTTTGCTAGAACACCACCACATTTGCTGAGAACACCACATATGATGGACCACCATGTTGGATCGGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGCCAAATTCTTATTTGGGAGGGTCCCCTGATGCTTCTGGTTTTCGCTTGGGCTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCACGTTGGTGGGAATGGCACTGAACTGACATCCACTGCAGGGCAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGCAAGGCATCCCATGTCTTCAATGTCAAAATTTGATACTACCAATGACCGAATGAGAAACCTTTATCATCGTAGAAACGAATCAAGCACCAACAATGTTGACAAGAAGCAATACGAGCTTGATCTAGCTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCTAACAAGTATACTTCAAAAATGCTTCTTGCTGCAATAGATGAGCAATGTAAGGGAACTTACGATTTCCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCCGGTCAAATTATCCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTGGCATATGCCCGAATTCAAGGAAAAGCTTCTCTCATTGCTCATTTCCAGAACTCAAGCCTGATGAACGAAGACAAGCGATGCCGTCCTATCCTCTTCCATACTGATGGCCCAAATGCCGGTGATCCGGAACCTTTCCCCATGGGTGCTAACATCAGACTGCGGGCCGGAAAATCTCGCATCGGCGGCGGCGAGGAGAATCGAAGCCAAGGGAGTCCTTCAGCTTTGGCAAGTGGAGAAGAGTGTGGTAATGGTATAGACAGTTCAAAAAACTAA 2841 0.421 MPFQIMDRRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTPPLDVNAKAGLLMSQANLPGDSIDSKESLNYRPKSFSDASLQSASTSYGLNGNKIVSNAGPCESSLFSSSMSEIFSRKLRLFGNDVQSDRTIAAGFPEEPCKSLKEMEADTIGNLLPDEDDLFSGVVDELGCSSHAKTIDDFEDFDLFSSGGGMEMEGDEHLSSGKIMNGLDGDYGFFGAFKGKLPFGEQPSRTLFVRNINSNVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEINHHKFIEFYDVRAAESALRALNKIDIAGKQIKLEPGHPSLMHQSHKGQDERDLGQSIMDSLPLRPKATGSSGIIGSGVLENGYNQRFQSAVRQPINAFMDNSFINVNNSSIHNTVRGASAGKVSGVSESNGYIDAMKFASSSRFHPHSLPEYRDSLANGSPYNFSSTISNLANNMGAGATEASDGRHIQGMGSTGNIAEFNAGGNGIRPHGLYHMWNSTNLQQQPSSNNVLWQKSPSFVNDACSPNLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERPNSYLGGSPDASGFRLGSLGSGGFHGSWQLHPLDFPSHNVFSHVGGNGTELTSTAGQNSPKQLSHVFPARHPMSSMSKFDTTNDRMRNLYHRRNESSTNNVDKKQYELDLARILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRAGKSRIGGGEENRSQGSPSALASGEECGNGIDSSKN 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04301 946 CDD RRM3_MEI2_like 779 864 IPR034454 -
Vimu11g04301 946 FunFam MEI2-like protein 5 isoform 2 241 335 - -
Vimu11g04301 946 SMART rrm1_1 778 854 IPR000504 GO:0003723
Vimu11g04301 946 SMART rrm1_1 338 406 IPR000504 GO:0003723
Vimu11g04301 946 SMART rrm1_1 253 321 IPR000504 GO:0003723
Vimu11g04301 946 SUPERFAMILY RNA-binding domain, RBD 249 407 IPR035979 GO:0003676
Vimu11g04301 946 PANTHER RNA RECOGNITION MOTIF-CONTAINING 83 907 - -
Vimu11g04301 946 CDD RRM1_MEI2_like 251 326 IPR034453 -
Vimu11g04301 946 Gene3D - 336 429 IPR012677 -
Vimu11g04301 946 Pfam RNA recognition motif 2 776 872 IPR007201 -
Vimu11g04301 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Vimu11g04301 946 SUPERFAMILY RNA-binding domain, RBD 778 863 IPR035979 GO:0003676
Vimu11g04301 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Vimu11g04301 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Vimu11g04301 946 Gene3D - 246 335 IPR012677 -
Vimu11g04301 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Vimu11g04301 946 MobiDBLite consensus disorder prediction 909 946 - -
Vimu11g04301 946 FunFam Protein MEI2-like 1 336 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04301 Vimu-Chr11 64352582 64358625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04301 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.153 1.12e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04301 - - gmx:106798747 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04301 11 64352582 64358625 Vimu11g04301 11 64352582 64358625 ECH