Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04296 ATGCTCGCAAGGTGTTTGCTGAAATTCATGAAGTGTGATGTGGCTATGTGTGAAGGAAGCGCAAGAAAACAGTACAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTGGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAAACAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCGTTACAAGCCTCTTCAACTCCCTTCCAACTGCTTCCTCGTCACACTTCAACTGATAATGATGCCATTCTTTCTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAACTCCGCAGCTTCTTCTTCCGAGCCTCCTACCAAACGGAAACCTGATTTCGATGCCAAACAAAAACGTTGA 477 0.4843 MLARCLLKFMKCDVAMCEGSARKQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGNKAKLNFPEKVHLSGELGYLTNRPPSLQASSTPFQLLPRHTSTDNDAILSSSSSPSSSTFSMNSAASSSEPPTKRKPDFDAKQKR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04296 158 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 PANTHER DNA-BINDING DOMAIN 20 137 IPR044808 GO:0003700|GO:0009873
Vimu11g04296 158 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 MobiDBLite consensus disorder prediction 95 158 - -
Vimu11g04296 158 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vimu11g04296 158 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vimu11g04296 158 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 MobiDBLite consensus disorder prediction 95 144 - -
Vimu11g04296 158 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Vimu11g04296 158 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04296 Vimu-Chr11 64321144 64321620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04296 22 121 AP2-EREBP Transcription Factor Family AT5G61890 64.356 4.25e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g04296 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04296 - - vra:106766671 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04296 11 64321144 64321620 Vimu11g04296 11 64321144 64321620 ECH