Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04272 TTTGTTTTTTGGGTGACCCGACAGAGAACAATGGCGGCGAAATCGAGTTCGAGTTCGACAAACGTGACGGTGAAGGCGGCGTGGGTTCTGCCGCACCGGACGCAGAACATCTGGGAGGTGTACGAGGTGGGTAGGAAGCTGGGGCAGGGGCAGTTCGGGACGACTTTCCTGTGCACGCGTCGTGAGACGGGTGGAAAGTTTGCGTGCAAGTCGATTCCCAAGCGGAAGCTTCTGTGCAAGGAGGACTACGAGGACGTGTGGCGGGAGATTCAGATAATGCACCACTTGTCGGAACATGCTAACGTGGTTCGCATAGAGGGAGCGTACGAGGACTCTTCTGCCGTGCACCTCGTCATGGAGCTCTGCGAAGGCGGCGAGCTCTTCGACCGGATCGTCCAGAAGGGCCACTACAGTGAGAGACAGGCGGCGAGGTTGATAAAGACCATTGTTGAGGTTGTGGAGGCTTGTCACTCGCTTGGAGTCATGCATAGGGACCTCAAGCCCGAAAATTTTCTCTTTGACACTGTTGACGAGGATGCCAAGCTAAAAGCTACCGATTTTGGGTTGTCCGTTTTTTACAAGCCTGGTGGGTTGTGGGTTGAACCGGAGTGTGCGCTTGTTGTTACAATCTTCAATTTGGTTTCTTTGGAGTGTTGGCGCTTTCTTTCCTTTTCTTTTTTCAGATTTTTGGTTTCTAAATTTGGGATAGCATCTGTTAGAAAATGTCCTGAGAAATTAGTTTCTAACTCTAGCTCAGAGATAACCAGAGTTCACCTGCAAAAAGCTGTCAACTTTTTTGGGTGGAATCATATTCCGTTTTTAATTTGGTTGGAAATGGGTCTGGTTATACTTCAAACTAGTGTTTACAATCTCGACTCCGCTTCTGTGAAAAAGCCTATTCCAATCTTGAATTTGCTTACTCTAATGCGTGAATCGTTTTGTGATGTTGTCGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGGCCTGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATTTTATTGAGTGGGGTGCCACCATTTTGGGCTGAAACTGAACCCGGGATCTTCAAACAGATTTTACTGGGAAAACTTGATTTTCAATCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACCAGGCTTACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAGCATTGCACCAGATAAACCTCTAGATTCTGCAGTTATTGCCGAGAGGCTGTCTGAAGAAGAAATTGGTGGCCTGAAAGAGTTATTCAAGATGATTGACACTGACAACAGTGGATCCATAACATTTGATGAATTAAAAGACGGCCTGAAGCGAGCAGATATTGATAAAAGTGGAACAATTGATTATGGCGAATTCATTGCTGCCACTGTTCATTTAAACAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAGGATGGCAGTGGTTACATAACTCTTGATGAGATACAACAAGCTTGTAAGGACTTTGGTTTAGACGATGTTCATATTGATGACATGATCAAGGAAATTGACCAAGATAATGATGGGCAAATAGATTATGGGGAATTCACTGCCATGATGAGAAAGGGCAATGGAGGAATTGGAAGGAGAACAATGAGAAAAACACTGAATTTAAGAGATGCTTTTGGGTTAGTAGAAAATGGCTCCAATCAAGTTATTGAGGGCTACTTTAAGTAA 1782 0.4534 FVFWVTRQRTMAAKSSSSSTNVTVKAAWVLPHRTQNIWEVYEVGRKLGQGQFGTTFLCTRRETGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGAYEDSSAVHLVMELCEGGELFDRIVQKGHYSERQAARLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVDEDAKLKATDFGLSVFYKPGGLWVEPECALVVTIFNLVSLECWRFLSFSFFRFLVSKFGIASVRKCPEKLVSNSSSEITRVHLQKAVNFFGWNHIPFLIWLEMGLVILQTSVYNLDSASVKKPIPILNLLTLMRESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFKQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDSIAPDKPLDSAVIAERLSEEEIGGLKELFKMIDTDNSGSITFDELKDGLKRADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFTAMMRKGNGGIGRRTMRKTLNLRDAFGLVENGSNQVIEGYFK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04272 593 CDD EFh 497 556 IPR002048 GO:0005509
Vimu11g04272 593 FunFam Calcium-dependent protein kinase SK5 490 585 - -
Vimu11g04272 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vimu11g04272 593 Pfam Protein kinase domain 41 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04272 593 Pfam Protein kinase domain 312 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04272 593 Gene3D Transferase(Phosphotransferase) domain 1 127 218 - -
Vimu11g04272 593 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Vimu11g04272 593 Pfam EF-hand domain pair 495 556 IPR002048 GO:0005509
Vimu11g04272 593 SMART serkin_6 41 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04272 593 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Vimu11g04272 593 SUPERFAMILY Protein kinase-like (PK-like) 41 420 IPR011009 -
Vimu11g04272 593 ProSiteProfiles EF-hand calcium-binding domain profile. 530 561 IPR002048 GO:0005509
Vimu11g04272 593 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Vimu11g04272 593 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Vimu11g04272 593 Gene3D Phosphorylase Kinase; domain 1 43 126 - -
Vimu11g04272 593 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Vimu11g04272 593 Pfam EF hand 441 467 IPR002048 GO:0005509
Vimu11g04272 593 Gene3D - 430 474 - -
Vimu11g04272 593 FunFam CDPK-related kinase 3 33 201 - -
Vimu11g04272 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 551 - -
Vimu11g04272 593 ProSiteProfiles Protein kinase domain profile. 41 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04272 593 FunFam Calcium-dependent protein kinase 1 43 126 - -
Vimu11g04272 593 Gene3D - 490 593 - -
Vimu11g04272 593 Gene3D Transferase(Phosphotransferase) domain 1 287 429 - -
Vimu11g04272 593 FunFam Calcium-dependent protein kinase SK5 323 418 - -
Vimu11g04272 593 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Vimu11g04272 593 SMART efh_1 530 558 IPR002048 GO:0005509
Vimu11g04272 593 SMART efh_1 496 524 IPR002048 GO:0005509
Vimu11g04272 593 SMART efh_1 440 468 IPR002048 GO:0005509
Vimu11g04272 593 SUPERFAMILY EF-hand 432 557 IPR011992 -
Vimu11g04272 593 CDD STKc_CAMK 40 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04272 Vimu-Chr11 64134768 64140202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04272 315 579 EF-hand Containing Proteins AT1G35670 69.408 5.98e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu11g04272 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04272 K13412 - gmx:547825 539.265