Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04260 ATGGTTGGAGAAGATGATGGCCCTGGAGCTTTACACGACGGCGGCAAGGATTGTCGCGCTGACGATGAAGCTCTCGATTTGGATGATTCATGGCTGATTTGCGAGAATGAAGATTTAATGGAGTTCAAGATTAAGGTAGCATCTTTGGTTGAGTTGAGGGATTTGATTATGGATAAGTATGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCCAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGTCAAAAGGTGGTTTTGACCCCCACTCATTTGGCCATAGTGATGGAGTATGCAGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTTATTTCTGGTGTGCACTACTGTCATGCCATGCAAATTTGCCACAGAGATTTGAAGTTAGAAAACACACTTTTAGATGGTAGCCCTGCACCCCGCTTGAAAATTTGTGACTTTGGCTATTCCAAGTCATCTCTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGAGAGTATGATGGAAAGCTGGCTGATGTATGGTCGTGTGGAGTGACTCTTTATGTGATGCTGGTTGGAGCTTACCCTTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGAATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGACTGCAGACACCTTCTTTCTCGTATATTTGTTGCAAATCCATTAAGGGCATTCTTTTCTCTCCTCTGCACTGCTTTCCATACGTCATGCTTAGGTTTGTCAGAGATCCGGGACAATGCAAAATTGAGACTGAGAATCTCCCTTAAGGAAATTAAGAACCACCCATGGTTTTTGAAGAATCTTCCAAGAGAGCTAACTGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAACCCAAGTTTTTCTGTTCAAAGTGTGGAGGAGATAATGAAAATTGTGGGAGAAGCAAGGGACCCTCCTCCAGTTTCTAGGCCTGTCAAAGGTTTTGGCTGGGACGGTGAAGAAGACGAAGGGGAAGAAGATGTGGAGGAAGAGGAGGATGAAGAAGATGAATATGACAAGAGGGTGAAGGAAGTTCATGCCAGTGGAGAATTTCAAATCAGCTAA 1233 0.4444 MVGEDDGPGALHDGGKDCRADDEALDLDDSWLICENEDLMEFKIKVASLVELRDLIMDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRAFFSLLCTAFHTSCLGLSEIRDNAKLRLRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRPVKGFGWDGEEDEGEEDVEEEEDEEDEYDKRVKEVHASGEFQIS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04260 410 SMART serkin_6 60 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04260 410 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Vimu11g04260 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Vimu11g04260 410 Gene3D Phosphorylase Kinase; domain 1 45 98 - -
Vimu11g04260 410 PANTHER SERINE/THREONINE KINASE 58 353 - -
Vimu11g04260 410 MobiDBLite consensus disorder prediction 359 410 - -
Vimu11g04260 410 Coils Coil 377 404 - -
Vimu11g04260 410 Pfam Protein kinase domain 96 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04260 410 MobiDBLite consensus disorder prediction 375 394 - -
Vimu11g04260 410 SUPERFAMILY Protein kinase-like (PK-like) 49 349 IPR011009 -
Vimu11g04260 410 FunFam Serine/threonine-protein kinase SRK2A 111 327 - -
Vimu11g04260 410 ProSiteProfiles Protein kinase domain profile. 1 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04260 410 ProSiteProfiles Intein N-terminal splicing motif profile. 18 107 IPR006141 GO:0016539
Vimu11g04260 410 Gene3D Transferase(Phosphotransferase) domain 1 111 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04260 Vimu-Chr11 63970993 63976838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04260 59 322 CBL-interacting serine-threonine protein kinases AT4G24400 35.570 8.73e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g04260 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04260 K14498 - gmx:547968 593.964