Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04254 ATGCCAGTTGTTGATTCAAGCACGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAAAAATTGCAGAAACGTTTGTTTGTCGGTGCTGAACTACACGGGAAAAAGGGTGATGAAGTATATCCATGCAGAATATTAAAAGTAATTCAGAAAGGAGTTGACACATTCAGTTATGAGGTAGCTTGGCTTGACAAAAACAAAAATATAAGTGAACAAGCTGAACTCTGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGGGAATCTACATGCCAGAATGCCCCATGGGTTTTACATGATGAACTAGCAAAAAGTTATGGAATATCAACTGACATTCCTAAAGAATTAAGAGGGAGGGTTTTTTACAGAGATGGACTTCTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCACTGGAAGACACTGATAACAGTAAAAGGAAGAAGTTGGATGGGGCACAAGTTGATGATTCTTGCCAAGAGAAAGGTAGAGTTGTTCAAAAGAATGAAGCTATCAAATACCCAATTGATGATCTCTTGGTGAAACCTGGTCCGGATGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAAAGACTTCAACATTCCAATGAGTTGTGTTGGGGATCTCTTAATGGTTTGGGATTTGCTGAATTCCTTTGGTAGACTGTTGCACCTGTGGCCTTACTCTCTAGAAGATTTTGAAAATGCAATCTGTCATAAGGATAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTTTTTCGATTTCTCATCAAAGATGACGATGAATACTCTTCGGCTGTGAAGAACCGAAAGTTAAAGTCTAAGGTGATCAATATTCCTGAACTGCGGCACCATGAAGCAACTATAAAACGGGGACATTATGGCCTTGTAGATGTCGGTGCTAAATTAGAAATCTTATCCAAATTGGTCAACCAAGCCCTTGAAACCGCAATTTTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGAAGAAGCATTGGAAAAAGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCCAGAAGCAATGGATTTGTGGATGGGCTTCTGAGTGGTGCTAAAGTCCCAACGAATGATAATCATGGTATACAAAATGGAGACATGGATGAGAAAAGTCTTATAGAGGTAGAACCAACTGGGCAAAACAGACAATTGGATAGAAGTGAGATCAAGCCTTTAAATTCTGTTTCAAAAAAGACGCATAAGAAGCTAAATTCAGAGCTGAAAGAACCAACTGAAAATGGAGACATGGATGAGAAAAGTCTTATAGAGGTAGAACCAACTGGGAAAAACAGACAATTGGATAGAAGTGAGATCAAACCTTTAAATTCTGTTTCAAAAAAGACGCATAAGAAGCTAAATTCAGAGCTGAAAGAACCAACTAAAAATGGAAAAGAATTGTCCAGAAAGGAATCACCTAAACAGTCGAAAGCTGATAAGGAGGATCTGTCAGAGAAGAATAGTGAAGAACAGAGGAAAGAATATTTCGAAAAGGAGATGGAGAAACGATTTGTTCGTAGAAGTCCATTAGGTAAAGACAGAGATTACAATAGGTATTGGTGGTTCCGTCGAGATGGGAGGATATTTGTTGAAAGCTCTGACTCCAAGGAATGGGGATACTACAGCAGTAAGGAAGAGGTACTAGATGATAATACTCGATGCATTGATGAGTTCACTGAATTGCAAGGGATTATAGATGAATCTGTACTTCGTAGGTCTACTCGTGTTAGAGCTCCACCTAGACAGAATCCTGCCAATGCTTTCCTCAGATATGTTAACAAGTGGAAAGAAGAATAG 1893 0.3951 MPVVDSSTLPLKDLADSIGEKLQKRLFVGAELHGKKGDEVYPCRILKVIQKGVDTFSYEVAWLDKNKNISEQAELCAEDLVHKKPLFSRNILKSFIRESTCQNAPWVLHDELAKSYGISTDIPKELRGRVFYRDGLLICSKKRKNEESLEDTDNSKRKKLDGAQVDDSCQEKGRVVQKNEAIKYPIDDLLVKPGPDDPVFTDRPSPSKDFNIPMSCVGDLLMVWDLLNSFGRLLHLWPYSLEDFENAICHKDSNVVLLVESHAALFRFLIKDDDEYSSAVKNRKLKSKVINIPELRHHEATIKRGHYGLVDVGAKLEILSKLVNQALETAIFREKLDEIIEQRQALGASRREEALEKGRRRREEKERLKAESRSNGFVDGLLSGAKVPTNDNHGIQNGDMDEKSLIEVEPTGQNRQLDRSEIKPLNSVSKKTHKKLNSELKEPTENGDMDEKSLIEVEPTGKNRQLDRSEIKPLNSVSKKTHKKLNSELKEPTKNGKELSRKESPKQSKADKEDLSEKNSEEQRKEYFEKEMEKRFVRRSPLGKDRDYNRYWWFRRDGRIFVESSDSKEWGYYSSKEEVLDDNTRCIDEFTELQGIIDESVLRRSTRVRAPPRQNPANAFLRYVNKWKEE 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04254 630 ProSiteProfiles DDT domain profile. 214 275 IPR018501 -
Vimu11g04254 630 MobiDBLite consensus disorder prediction 347 526 - -
Vimu11g04254 630 Pfam DDT domain 215 272 IPR018501 -
Vimu11g04254 630 Coils Coil 351 371 - -
Vimu11g04254 630 MobiDBLite consensus disorder prediction 424 526 - -
Vimu11g04254 630 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 6 579 - -
Vimu11g04254 630 MobiDBLite consensus disorder prediction 409 423 - -
Vimu11g04254 630 MobiDBLite consensus disorder prediction 347 373 - -
Vimu11g04254 630 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 538 586 IPR028941 -
Vimu11g04254 630 SMART testlast3 214 275 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04254 Vimu-Chr11 63936651 63940619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04254 205 272 Homeobox Transcription Factor Family AT1G28420 45.588 3.12e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu11g04254 WSD 5.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04254 - - var:108323886 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04254 11 63936651 63940619 Vimu11g04254 11 63936651 63940619 ECH