Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04245 ATGAGTTTAGAAGAGTTGGGTGAGATGATGGAGATATATGAGAATACACTCGGGAAGAGTCGTTACCTAGCTGGGGATGAATTCACACTTGCAGATCTCTTCTATCTTCCCAGTGTTCATAACTTGGTCAATATCACTGACACTGCTCCACTATTTGCTTCTCCAAACCTTTCCAAGATGGTCGAACGATATCTCCTCTCGTCCTTCTTGGAAGAAGCTTCTTCAAATTCGCCAAGAATACTTAAAAAGGAATTAAATGCCTTTCAGGTACCTCCCCCTCTCGGTCAGAGCTCGAAGATCACCGGACGGTTGAGGCAAACACAAGGCGTACGGTCAAGAACTAAAGGAAGCAGACAGAAGGACAGAAGACGACGTCATCAAGGTCAGTCCTTTCGACTCCCTATGGTGACCACAAGAAGCATGGAAGGAGACAATCAACAAGAAACCTGTCTGAAGCTGAATGAGGAACTTAGACAACTCAAAGAAAAACGACCAGAAACAACAGATGACAATAGTCGGAATGATAATGGCAACACTAATCAGAACGACCCTCCTCGCTCGCCGGACCTGCTACCCTTTACTGAGGCCGTCATGCAAGCTCCCATGCCCGACCGGCCTCCTCCACAAATAGAAAGGTTCGACGGAACAACGGACCTGGAGCACCATCTCCGAAATTTCGTTGATTCAATGGCCTTCTACTCCAACAACGATCCGGTCAAATGCCGAGCATTCTCCCTATCCCTAAAGGGCGAGGCTCTAGAACAAGAGAAGGATGAATCACTGAGAATGTTCATGCGCAGATACACTGAGGTGGCAAGAAGAGTTAAGGGGGTTACGTCTCGGAATGCCTATACGCCGAATTACCCGAAAACAATGGAGGAATTGCAGGAGAAGATGAACAAGTTTATCAAAATGGAGGATCAACGGCACTTTCGCCGAAAGGCGGATGCCGTTACGACAGAGGCCAAGCAGGAAGGCAGACGATCGCGGGATAAAGGCCGTAATCATAAACCGCCACGAAGGGACCCCCCGACCCTTTACAATCCTCAGTATAATCGATATGCCCCTCTCACGGCTCCGAGGGAAAAGGTATTCGAAAAGGCCCTTCAGGCTAATCTCATTACCGCCCTCAAACGTGAGACACCGAGTGCCGCAGATGGAGCTAAAGTCTGTAAGTATCATGGCAACCAGGGACACACCACAGAAGATTGTCGGGTCCTCAAAGACAGAATTGAAAAGCTGATTCGTGCGGGGCACTTGCAGGAATTTGTCCGAACAGAAACACATCAACGGGGGCGATCGCCTAGAAGGGCACGGAAAAGCCCTGAACGTTCAAGGAGAAACATCGAGCGCTCTAGGGAACGCTCTCGCGAGCGCTCTCGCAGTCGGCCTCAAAAGCGGGACACAACTCCAAGAGGCAGGATTGACACTATCTCAGGTGGCTTTGCGGGTGGTGGGGCCTCGTCCTCAGCTCGTAAAAGATACTTAAGAAACTTACGAAGCGTTCTTTCCGTGGTCCACAATCCTTTGTCGATGCCAGACATCACCTTTACCGACAAGGATTTTCATGCCCCAGATCCCGATCAGGATGATCCCATGTATGATGTGAGTAAGGTTCTGGTGGATCAGGAAAGCTCGGTCAACATCCTATATTGGACTACCTTCCAAAAAATGGGATTACCGGAAGATATGACAGCACCCTTCAGCGAACAAATTGTAGGGTTCGCGGGAGAACAAGTGGATACTCGGGGATACCTTGACCTCAAAACCCGACTGGGCACAGGAGACAGGGCCAAAGAGCTCTGCGTACGTTTTTTACTGGTGGAAGCATACACCTCATATAACGCCCTTTTAGGACGACCGTGCCTAAATACCTTTGGCGCAATTGTCTCTACTCCTCACTTGGCGATGAAATTCCCTTCGGAAGACGGAACTATATGTACCGTTCGGGCGGATCAGAAAACCGCTCGACAATGTTACGCTGCTGCTTTGAAGGCCACACCATACCACAAAGAAAAGCGATCCGAAGCGATACTGGTCGACCTAGATCCTCGGACCAATACGGACAACCGCATCCAACCCCAGGGGGAAACTAAACCATTCGAAAATGACTTAACCACACTATTGAGGTCGAACAACAAACTTTTTGCGTGGACCTCCTCTGACATGTCGGGAATTCATCCTAGTGTGATCACCCATAAGCTATCGATATTCCGTGAGGCCCATCCGATAGCTCAGAAAAAGCGGCGACTTGGTAATGACAAAAGAGAAGCCGTGCAAAACGAAGTGAACAAACTGGTAAAAGCCGGATTCGTCCGAGAAATCCGATACACCACTTGGCTCGCAAACATTGTGATGGTAAAGAAAGCAAATGGTCAATGGCAAATGTGCGTCAACTTTACAGATCTCAATAAAGCCTGTCCCAAGGATAATTATCCCCTTCCCAGCATCGACCGGTTGGTAGACGGCGCTTCAAGACACACGGTCCTGAGCTTTCTTGATGCATATTCGGGATATAACCAAATCCCAATGCACGTTCCGGACCAGGAGAAAACAACTTTCATAACCGAACATGCCAACTATTGCTACGAAGTGATGCCGTTCGGTCTGAAAAATGCAGGCGCAACTTACCAACGGCTCATGGACAAAGTCTTCCAAGATCAAATCCGACGGTGTATGAAAATTTATGTCGACGATATGGTAGTGAAAAGTTCTTCCCACCAACAACACTTGAAAGACTTGGCTGAAGTCTTCCAACAGCTAAAACGATATGACCTACGGTTAAATCCTTTGAAATGCACTTTTGGTGTACAGGCCGGTAAGTTCTTGGGTTTCATGCTAACCGACCGAGGAATAGAGGCCAATCCAGACAAATGTCGGGCGATTTTGGAGATGCGGAGCCCAACTAAACTAAAAGAGATCCAATGTCTGGTCGGCCGCCTTACTGCCTTATCACGACCACATCAAACCGATACTAAAGAACATGAAGCCAAATGTACCCCGACACTGGGATGA 3015 0.4839 MSLEELGEMMEIYENTLGKSRYLAGDEFTLADLFYLPSVHNLVNITDTAPLFASPNLSKMVERYLLSSFLEEASSNSPRILKKELNAFQVPPPLGQSSKITGRLRQTQGVRSRTKGSRQKDRRRRHQGQSFRLPMVTTRSMEGDNQQETCLKLNEELRQLKEKRPETTDDNSRNDNGNTNQNDPPRSPDLLPFTEAVMQAPMPDRPPPQIERFDGTTDLEHHLRNFVDSMAFYSNNDPVKCRAFSLSLKGEALEQEKDESLRMFMRRYTEVARRVKGVTSRNAYTPNYPKTMEELQEKMNKFIKMEDQRHFRRKADAVTTEAKQEGRRSRDKGRNHKPPRRDPPTLYNPQYNRYAPLTAPREKVFEKALQANLITALKRETPSAADGAKVCKYHGNQGHTTEDCRVLKDRIEKLIRAGHLQEFVRTETHQRGRSPRRARKSPERSRRNIERSRERSRERSRSRPQKRDTTPRGRIDTISGGFAGGGASSSARKRYLRNLRSVLSVVHNPLSMPDITFTDKDFHAPDPDQDDPMYDVSKVLVDQESSVNILYWTTFQKMGLPEDMTAPFSEQIVGFAGEQVDTRGYLDLKTRLGTGDRAKELCVRFLLVEAYTSYNALLGRPCLNTFGAIVSTPHLAMKFPSEDGTICTVRADQKTARQCYAAALKATPYHKEKRSEAILVDLDPRTNTDNRIQPQGETKPFENDLTTLLRSNNKLFAWTSSDMSGIHPSVITHKLSIFREAHPIAQKKRRLGNDKREAVQNEVNKLVKAGFVREIRYTTWLANIVMVKKANGQWQMCVNFTDLNKACPKDNYPLPSIDRLVDGASRHTVLSFLDAYSGYNQIPMHVPDQEKTTFITEHANYCYEVMPFGLKNAGATYQRLMDKVFQDQIRRCMKIYVDDMVVKSSSHQQHLKDLAEVFQQLKRYDLRLNPLKCTFGVQAGKFLGFMLTDRGIEANPDKCRAILEMRSPTKLKEIQCLVGRLTALSRPHQTDTKEHEAKCTPTLG 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 90 146 - -
Vimu11g04245 1004 SUPERFAMILY GST C-terminal domain-like 3 63 IPR036282 -
Vimu11g04245 1004 CDD retropepsin_like 538 624 - -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 172 187 - -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 306 341 - -
Vimu11g04245 1004 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 732 872 - -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 131 146 - -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 159 191 - -
Vimu11g04245 1004 Coils Coil 143 170 - -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 91 113 - -
Vimu11g04245 1004 Pfam Glutathione S-transferase, C-terminal domain 3 64 IPR004046 -
Vimu11g04245 1004 CDD RT_LTR 770 946 - -
Vimu11g04245 1004 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 704 983 - -
Vimu11g04245 1004 SUPERFAMILY DNA/RNA polymerases 730 986 IPR043502 -
Vimu11g04245 1004 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 1 94 IPR010987 -
Vimu11g04245 1004 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 768 947 IPR000477 -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 443 473 - -
Vimu11g04245 1004 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 788 946 IPR000477 -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 306 352 - -
Vimu11g04245 1004 Gene3D - 1 67 - -
Vimu11g04245 1004 Gene3D - 812 947 IPR043128 -
Vimu11g04245 1004 MobiDBLite consensus disorder prediction 422 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04245 Vimu-Chr11 63877826 63882354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04245 5 63 Glutathione S-transferase Gene Family AT2G47730 45.000 1.05e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04245 - - vra:106753157 1336.63