Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04244 ATGGCATCTGAGACTCAGAGGGCTCCTATGTTGCCGATCTCCTTTTTTAAAGTTATTCTTAGAACCAATCTTCAAACCGTTAAAATACCAAATATGTTTACTGCCAAATATGGAGATGGTCTCCCAAATCCTTTGTTCATGAAGCTTCCAAATGGAACTCAATGGAAAATGATTTGGGAAAATGAAAACGGTGAGATTTTGCTGAAAGAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGGAGATTTAGTTTTCTTTGAATACGAAGGAACAGATCAGATCAATGTAAATATATATATATATATATATATATATATATATATATATATATATAAGCAAAATGGAGTAGAAATGGACTATCCACACGAAGAAGAGAGCTCTGAACAAATAGGAGGTAAGGATTCATTGTTTGTTTGCTTTGTTATCTTTATATTTTTTTCATCTCACAAAATTTCAGATTCTTCACAAAACATGTCGTTGACTGGTTTAGTACGTGAATTGTATTCCAAAGGTGAGAGGTTTGTTCAAAGAACTTCATCTTTAAACCAGCCAAATGAAACTAGGGCAAGAGAAGTAGCATGCAATTTCATTTCATGCAATCCCTTTTTCATTGTTGTCATCACACCTTCTCATGCCATGGAATATGAGATGAACGTACCAGATCTGGAAGGCATTATTGAAAAGAAGGAGTATGTTGTGCTGCAGCGTGGGGAAACATCGTGGAGAGTAAGGATGTTATTTAATAATGCTCGTTATAGATTCGGTGTTGGTATTCGTTTGTTTCTTACGGAAAATGAATTGAAGGAAGGAGATATTTGTATATTTGAATTGATTAACAAGGATGATTGTATTTTTAAAGTTTATGTTTTTTAG 882 0.3424 MASETQRAPMLPISFFKVILRTNLQTVKIPNMFTAKYGDGLPNPLFMKLPNGTQWKMIWENENGEILLKEGWNEFTEHHSLDHGDLVFFEYEGTDQINVNIYIYIYIYIYIYIYKQNGVEMDYPHEEESSEQIGGKDSLFVCFVIFIFFSSHKISDSSQNMSLTGLVRELYSKGERFVQRTSSLNQPNETRAREVACNFISCNPFFIVVITPSHAMEYEMNVPDLEGIIEKKEYVVLQRGETSWRVRMLFNNARYRFGVGIRLFLTENELKEGDICIFELINKDDCIFKVYVF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04244 293 CDD B3_DNA 204 293 IPR003340 GO:0003677
Vimu11g04244 293 CDD B3_DNA 14 95 IPR003340 GO:0003677
Vimu11g04244 293 Gene3D - 184 293 IPR015300 -
Vimu11g04244 293 Gene3D - 12 103 IPR015300 -
Vimu11g04244 293 Pfam B3 DNA binding domain 22 101 IPR003340 GO:0003677
Vimu11g04244 293 Pfam B3 DNA binding domain 209 286 IPR003340 GO:0003677
Vimu11g04244 293 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vimu11g04244 293 SMART B3_2 15 105 IPR003340 GO:0003677
Vimu11g04244 293 SMART B3_2 205 291 IPR003340 GO:0003677
Vimu11g04244 293 PANTHER B3 DOMAIN-CONTAINING 14 288 - -
Vimu11g04244 293 ProSiteProfiles B3 DNA-binding domain profile. 205 293 IPR003340 GO:0003677
Vimu11g04244 293 SUPERFAMILY DNA-binding pseudobarrel domain 14 102 IPR015300 -
Vimu11g04244 293 SUPERFAMILY DNA-binding pseudobarrel domain 202 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04244 Vimu-Chr11 63874472 63875533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04244 11 293 B3 DNA Binding Superfamily AT3G18990 27.405 2.10e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu11g04244 B3 4.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04244 - - vra:106773422 368.237