Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04240 ATGAGCAGTCCTCCGGTGAGTTCGTCGGCCGTAGCATACGAAGCATGGACAAGCCTGGCAGTGCCGGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTTTCAGCCACGTTGGTGGGGATCCAAAGCATGCCGGGACTCGTCATTCTCTACGGAAGCATAGTCAAAAAGAAATGGGCCGTCAACTCCGCCTTCATGGCTCTCTACGCTTTTGCGGCGGTCGTCATCTGCTGGGTCACCTGGGCTTACAAGATGTCCTTCGGGGAGAAGCTTCTGCCCTTCTGGGGCAAGGCCGGGCCGGCGCTGGGCCAGAGGTTTCTCATAAAGCAGGCGGCCCTCCCCGCCACACCGCACCACTTCAGTAACGGCGCGTTGGAGACCGCCGAGATCGAACCCTTTTACCCCATGGCTACCATGGTCTGGTTCCAGTGCGTGTTTGCCGCCATTGCTCTTGTTATCTTGGCCGGCTCCGTTCTGGCTCGGATGAACTTCAAGGCCTGGATGATGTTCGTGCCGCTCTGGCTGACCTTCTCTTACACCATCGGCGCCTTCAGCTTGTGGGGCGGAGGCTTCTTGTTCCATTGGGGTGTCATGGATTACTCCGGCGGTTACGTCATTCATCTCTCTTCTGGGATTGCTGGTTTCACTGCAGCATATTGGGTGGGACCGAGATCCAAGAGGGACAGAGAAAGGTTTCCGCCAAACAATGTGTTACTGATGTTGGCAGGTGCAGGGCTACTGTGGTTGGGATGGGCGGGTTTCAACGGAGGAGATCCGTACGCGGCAAACACGGACTCATCGATGGCGGTGCTGAACACCAACATTTGCGCCGCCACCAGCCTCCTCGTATGGACCTGGTTGGACGTTATTTTCTTCAAAAAGCCCTCAGTCATCGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCTGCGATAGTGATGGGAGTGGTTTCAGGAAGTGTGCCATGGTACAGCATGATGGTGTTGGGAAAAAAGTTGAAAATATTTCAAATGGTTGATGACACACTTGCAGTGTTCCATACTCATGCTGTGGCTGGTCTTCTTGGAGGAATACTCACTGGTCTATTTGCTGAGCCAAGGCTAAGCACACTCTTTCTTCCTGTCACAAATTCCAAAGGAGGAGTCTATGGAGGCCCTGGAGGAATCCAGATTCTCAAGCAGATCGTCGGAGCTCTCTTCATCATTGGGTGGAACCTTGTGGCCACTTCGATCATTTGTGTCTTTATTAATTTCATAGTTCCACTCAGAATGACAGAGGAAGAACTTCTCATCGGCGATGATGCAGTTCATGGGGAAGAAGCTTATGCACTTTCGGGTGATGGAGACAACCTTAGCCTCTACAAAGATGATACCACACACCATGTTACGGTCTCTAGTGGTGCCACTCAAGTTGTCTGA 1458 0.5288 MSSPPVSSSAVAYEAWTSLAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGEKLLPFWGKAGPALGQRFLIKQAALPATPHHFSNGALETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVVSGSVPWYSMMVLGKKLKIFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSTLFLPVTNSKGGVYGGPGGIQILKQIVGALFIIGWNLVATSIICVFINFIVPLRMTEEELLIGDDAVHGEEAYALSGDGDNLSLYKDDTTHHVTVSSGATQVV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04240 485 SUPERFAMILY Ammonium transporter 24 437 - -
Vimu11g04240 485 FunFam Ammonium transporter 12 458 - -
Vimu11g04240 485 PANTHER AMMONIUM TRANSPORTER MEP2 16 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g04240 485 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vimu11g04240 485 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
Vimu11g04240 485 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Vimu11g04240 485 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Vimu11g04240 485 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Vimu11g04240 485 NCBIfam ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu11g04240 485 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu11g04240 485 Gene3D Ammonium transporter AmtB like domains 5 459 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04240 Vimu-Chr11 63832457 63835928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04240 137 475 Inorganic Solute Cotransporters AT2G38290 71.091 3.55e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04240 K03320 - gmx:100785993 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04240 11 63832457 63835928 Vimu11g04240 11 63832457 63835928 ECH