Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04238 ATGCAATTAAAACCAGGTGAGAAAGGCTTGGACTGGCCAACAAGAAAACGTATTGCTTTTGGCACAGCTCATGGTTTAGAGTACCTACACGAGCAATGCAATCCGAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTCTTGGTGACTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATTACTCATGTCACCACTCAAGTGCGTGGCACAATGGGTCACATTGCCCCAGAATATTTGTCCACAGGAAAATCTTCAGAGAAGACTGATGTATTTGGATATGGCATAACACTTCTTGAACTAGTCACCGGTGAGCGTGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTCATCGATTATGTAATCTGCCTCACCATTTACTTTATCACATCACATAAATGCTGCTTAATGCTCTGGCCCTTCTTACGTTATTACCTATTGAAAGTTCTGTTGATTTTTTTTTATTAA 507 0.4142 MQLKPGEKGLDWPTRKRIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARITHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDLSRLEEDEDVLLIDYVICLTIYFITSHKCCLMLWPFLRYYLLKVLLIFFY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04238 168 FunFam Os07g0541700 protein 3 80 - -
Vimu11g04238 168 Gene3D Transferase(Phosphotransferase) domain 1 2 150 - -
Vimu11g04238 168 SMART serkin_6 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04238 168 Pfam Protein kinase domain 14 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04238 168 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 131 - -
Vimu11g04238 168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Vimu11g04238 168 SUPERFAMILY Protein kinase-like (PK-like) 8 163 IPR011009 -
Vimu11g04238 168 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04238 Vimu-Chr11 63824538 63826366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04238 2 134 Receptor kinase-like Gene Family AT5G10290 78.947 1.48e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu11g04238 Pkinase 5.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04238 - - gmx:100799227 265.774