Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04225 ATGGGTGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAACAGTACGATCTGTTAGGGAAAATCGGCGAAGGCACTTATGGCCTCGTTTTTCTTGCAAGAACCAAAACCCCCTCTCCCTCCAAATCCATAGCTATCAAGAAGTTCAAGCAGTCCAAGGACGGCGATGGGGTCTCCCCCACCGCCATCCGAGAAATCATGTTGTTGAGGGAGATTACGCACGAGAACGTCGTGAAGCTCGTCAATGTTCACATCAACCACGCCGACATGTCGCTCTACCTCGCCTTCGATTACGCCGAACATGATCTTTACGAAATTATTAGGCATCACAGAGACAAACTCAACCATTCTATTAATCAGTACACGGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGATTAAGTTATCTGCACAGTAATTGGATGATACATCGAGATTTGAAGCCATCAAATATATTGGTTATGGGCGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCAAGGATATATCAAGCTCCTCTGAAGCCGCTATCTGATAATGGGGTTGTTGTAACTATTTGGTATCGTGCACCAGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAGAAGTGGCCTTCGTTGGCAAGTCTTCCACATTGGCAACAAGACGTGCAACATATACAAGGACACAAATATGACAACACCGGTCTCTATAATGTTGTGCACCTATCTACAAAAAGTCCTGCATACGACCTATTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATCGAACCATTACCTGGACGGAATGCTCTTGTACCATGTCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCTGTGGACAACACAACTGATCTTGAAGGGACAACCAATCTGGCAGCTTCACAAGCGGTAACTGCAGTTTCTGGCAGCATGCCTGGTGCTCATGGATCTAATAGATCTGTTCCTCGGCCAATGAATGTTGTTGGAATGCAAAGATTGCCACCTCAGCCAATGGGGGCTTATAATCTCACATCTCAGGCAGCCATGGGAGACGGAATGAATCCTGGGAATATTTCAAAGCAACGAGGTGTTCCACAGGGCCATCCGCAACAGGTTTAG 1326 0.4585 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKTPSPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNTGLYNVVHLSTKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDNTTDLEGTTNLAASQAVTAVSGSMPGAHGSNRSVPRPMNVVGMQRLPPQPMGAYNLTSQAAMGDGMNPGNISKQRGVPQGHPQQV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04225 441 FunFam Putative cyclin-dependent kinase E-1 101 340 - -
Vimu11g04225 441 MobiDBLite consensus disorder prediction 416 441 - -
Vimu11g04225 441 SUPERFAMILY Protein kinase-like (PK-like) 13 328 IPR011009 -
Vimu11g04225 441 CDD STKc_CDK8_like 17 327 - -
Vimu11g04225 441 FunFam Cyclin-dependent kinase e-1 6 100 - -
Vimu11g04225 441 Pfam Protein kinase domain 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04225 441 SMART serkin_6 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04225 441 ProSiteProfiles Protein kinase domain profile. 18 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04225 441 PANTHER CELL DIVISION PROTEIN KINASE 16 333 - -
Vimu11g04225 441 Gene3D Transferase(Phosphotransferase) domain 1 100 343 - -
Vimu11g04225 441 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Vimu11g04225 441 ProSitePatterns Protein kinases ATP-binding region signature. 24 50 IPR017441 GO:0005524
Vimu11g04225 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04225 Vimu-Chr11 63724416 63736551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04225 11 440 Core Cell Cycle Gene Families AT5G63610 77.931 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Vimu11g04225 Pkinase 8.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04225 K02208 - gmx:100794990 858.596