Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04224 ATGGGCAGAGAAAATGATTCAGCAAGGACAAAGGAAGAAGTTAGTGACGATGGTTCCTCGAGTGTTGAGAACGGGGATTTAGAATCTCATGCTCGAATTAGTCTGGACAAGGAAGGCTTGGAAACTTGTCGTGTGTGCCAATGTACTGAATCTGATAAAAGGGCAGATGCGGCGCTAGAATTTTTGGGCATCACCCCAGGTTTAGAATTGTATAAAAGCAAGGAGGAAGTAGGGTGTGATGGCAATGGAATTCCCAGAAATATGTCTCTTAACAGAAACATTGAAAAAAATACAGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATATGTAAAAGTGATTTGGAACTCGGTTTGTCTCATCAAGATAAACTAGTTGAACTTGGATGTTCTTGTAAAAACGATCTGGCTTTAGTACATTATGCTTGTGCACTCAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAGTTTCCGACTTCAATAAAGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACCGCTAGTGGTGATCCTGGTCCAGCACAAGCTCGTGCAAATGCTGGTGTGGACCCTGATGCAGTGGCTGCTATTCGGAGGCAACGGCTAATTGAGATTGCACTGTGGTTTTGTCCTCATAATAGCAGTACCAATAACAACGTTAGCAATGTGGACACAGTCTCACAGGTTGCTTCTGAGCAGCCTTTGAGTATTGTTACTGAAGATGCTGTCCCTGCACAAAATACTGCAACTAAATGGGCCGTGGAGGGTACAGGTATCCTGCTTGCTACGGGACTGCTTACCATCACCCTTGCGTGGCTTATAGCCCCTCGTGTTGGAAAGCCTGTGTTTGTTGTCCAGAAAACTGCTAAAAGTGGTCTTCATATCTTACTTGGAGGGGTTTGTGCTTTAGCAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTCGGAATATGGGCTTCAAGAGCCCATGCTGCACATACAACATGA 1101 0.436 MGRENDSARTKEEVSDDGSSSVENGDLESHARISLDKEGLETCRVCQCTESDKRADAALEFLGITPGLELYKSKEEVGCDGNGIPRNMSLNRNIEKNTGMVEFVSPDGEVFICKSDLELGLSHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRVSDFNKVVGALKEYEVLRERTASGDPGPAQARANAGVDPDAVAAIRRQRLIEIALWFCPHNSSTNNNVSNVDTVSQVASEQPLSIVTEDAVPAQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKPVFVVQKTAKSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRAHAAHTT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04224 366 SUPERFAMILY RING/U-box 125 164 - -
Vimu11g04224 366 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Vimu11g04224 366 SMART ringv_2 112 162 IPR011016 GO:0008270
Vimu11g04224 366 MobiDBLite consensus disorder prediction 1 18 - -
Vimu11g04224 366 Pfam RING-variant domain 127 161 IPR011016 GO:0008270
Vimu11g04224 366 PANTHER ZINC FINGER, RING-CH-TYPE 11 332 - -
Vimu11g04224 366 MobiDBLite consensus disorder prediction 1 30 - -
Vimu11g04224 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04224 Vimu-Chr11 63716017 63718925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04224 1 356 C3H Transcription Factor Family AT5G08750 63.115 3.05e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04224 - - gmx:100805323 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04224 11 63716017 63718925 Vimu11g04224 11 63716017 63718925 ECH