Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04220 ATGCAAGGAGAATTGGAATTACCACCTGGGTTTAGATTCCACCCCACCGACGATGAACTCGTGAATCACTACTTGTGTAGAAAGTGTGCTGCTCAGTCCATTGCCGCTCCCATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGACATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCCCCTCGTGACCGAAAATACCCAAACGGTTCACGACCCAACCGGGCTGCTGGAACTGGGTACTGGAAGGCCACTGGAGCGGATAAACCGATTGGAAAACCGGAAGCTCGTGGAATTAAGAAAGCCCTTGTGTTCTACGCGGGGAAAGCTCCGAAAGGGGTTAAGACAAATTGGATCATGCACGAATATCGCTTAGCCAACGTCGATAGATCTGCCTCCAAGAAAAACAACAATTTAAGGCTTGATGATTGGGTGCTATGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATAATGTCGACGGGGTGGTGGAACAGAAACCGGCGAAATTACCGGAGGAGATTCTGTTCCAGCACGAGATGAAGCCTGAGATCCAGATGTACGGCCACGATCATTTCAGGAACAACCAATTGTACATGGACACGTCGGATTCCGTGCCGAGGTTAAACACGGACTCTAGCTGCTCCGAGCACGTGGTTTCGCCGGACGGCACCTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAACGACCTGGAGTTGGGCCCGGACCTGGTTTCGGGCTACGATTTTAATTTCATGGAGCTGTCAGCAGATGACGCTTTTGCCCCTCAGGCCCAGTTCCAAATGAACCAGCCGTCGACGTGGCAAGATATGTTCGCGTACCTTCCGAAGACATTTTAA 888 0.4989 MQGELELPPGFRFHPTDDELVNHYLCRKCAAQSIAAPIIKEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPEARGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNNVDGVVEQKPAKLPEEILFQHEMKPEIQMYGHDHFRNNQLYMDTSDSVPRLNTDSSCSEHVVSPDGTCEKEVQSEPKWNDLELGPDLVSGYDFNFMELSADDAFAPQAQFQMNQPSTWQDMFAYLPKTF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04220 295 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vimu11g04220 295 PANTHER NAC TRANSCRIPTION FACTOR 56 7 208 - -
Vimu11g04220 295 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Vimu11g04220 295 FunFam NAC transcription factor 16 162 - -
Vimu11g04220 295 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Vimu11g04220 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04220 Vimu-Chr11 63701172 63702234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04220 1 295 NAC Transcription Factor Family AT1G01720 61.873 3.58e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g04220 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04220 - - gmx:100170751 537.339