Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04218 ATGGACGGAACTTCGTCTTCTGGAATTAATATTCCACCTGATATTCCACTAAGTCTTAATGTCCTTGTCATTGATACTGACCCCGAAGCTCTTGAATTCATCAAGAAATCATGCGAAGAGAATATTCGTTGCAAAGATATTTCTCATCAAGCTATAATATGTTTTGAATCTTCAATGGCTGTGGAGGTTTTGCTGAAAAAAGAAATAGACATTCATTTGATCGTCATGGAGCTTCATATGCCAATGCTGAATGGCTATGAATTCATGCAATTTCTCGATGAAGAAGGATTTGATATTCCTTTTGTCATGATGTCGTCTAAGTATGATGGTTTTCCTTGGTCTTCCGTGGAAAAGGCTTTCGAACTTGGGGCTATCGAGTATTTCTTTAAACCCTTCCGTGGTCGTGATCATTTGCTAGATTTGTGGTCACCTTTCTTAAAGCATTATATCGCCAGGCGTAAAGAGGATGAGACAAGTGATGGAGAAGCCAAAGATGATGAGACAAGTGATGGAGAAGCCAAAGCCGATGATACCCTCCACAAGAAAGACGACACACCCTAG 561 0.4011 MDGTSSSGINIPPDIPLSLNVLVIDTDPEALEFIKKSCEENIRCKDISHQAIICFESSMAVEVLLKKEIDIHLIVMELHMPMLNGYEFMQFLDEEGFDIPFVMMSSKYDGFPWSSVEKAFELGAIEYFFKPFRGRDHLLDLWSPFLKHYIARRKEDETSDGEAKDDETSDGEAKADDTLHKKDDTP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04218 186 ProSiteProfiles Response regulatory domain profile. 20 145 IPR001789 GO:0000160
Vimu11g04218 186 MobiDBLite consensus disorder prediction 154 186 - -
Vimu11g04218 186 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 161 IPR045279 GO:0009736
Vimu11g04218 186 Pfam Response regulator receiver domain 21 136 IPR001789 GO:0000160
Vimu11g04218 186 SMART REC_2 19 142 IPR001789 GO:0000160
Vimu11g04218 186 MobiDBLite consensus disorder prediction 167 186 - -
Vimu11g04218 186 SUPERFAMILY CheY-like 19 154 IPR011006 -
Vimu11g04218 186 Gene3D - 18 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04218 Vimu-Chr11 63675455 63676214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04218 3 184 Response Regulator Gene Family AT4G16110 25.275 2.53e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04218 Response_reg 6e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04218 - K02483 vra:106769483 322.783