Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04210 ATGGCGAACAACAAGAGCTCCAAGAAACCAGTCAGTCTCAATGATAGTCACTATCGCTTCCTCCAAGAGCATTCCGCTCCCCCCAAACCCTCTTCCAAACCTTTCGATGAAGAATCGATCAAATCCTCCGCGCGAAAACAGGAACACCATAGCATTCCTCAATTCTCCGCAATCACCGACTTCGATTCTCCAATCGCCTCGGAAGAGAAACACGAACCGATCAAGGCACATGAAGCAGAAGAAGTTGTAGCTCCGTCCTACGATATTTCTACTACTGTATTAGGGCAATACTCGGATAAGAAACACGAGCCAATCATCTTTCAAGAAGAAGAACAAGAAGAAGGTTCGTCCGACGTATTTATTTCTTCCACTACTCAATGGTGGGATTCATATGTTGATGATCATCGAACAATTACCAAGAATGGAACAAGAAGGATGTTAGGAAAAAATGTCTATAACATTGATGATCTTGCTTTTGTTCATGAATGGACTGTGGAGGAGAATGGAACAAATTCAGATTTGGATGCTTTAAATGTAGACATCTTAGCTAAAGTTGGAGAAGATGTTAGTGGTGCTGCACCTATGGGGCAAAACACGGATGAGAAACACGAACCGGCATTTTTTGAAGAAGAAGCTCCGGCGGACGTGTTTGATTTTCCCCCTAAGGAAGAAAGGACGACGAAGATGAAAGTAAAGGGGCGGCGGCGCCTATGTAAGATTGTGCATGAAGACGCTGGAAAAAGCGTGGCGGTTGATGAGTCCAAGTTTGATGAACTGATCGACCTTGATTCACCGATTCCGGTGCCCAAAAACGTCGTCCAGGTTGAGGAGAGTGGGGGCAAGAATGAAATCAGAGATATTTTGACTGAACTGAACGCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCCGAGGCCGAAGCGTGTTGAGGGTTTGGTTGTAGGTAAAGAAAGTTACGATGATGAGGGTTTAGAGTATGGTAGTGCAGGGTCTTCGTTTTCTCCGCAGCAGGAGAGCTTGGCTGAGGGTAATAAGAATGATGATGGCGACCGTATTGAGTATGATTCAGACGATTCAGTTCAAGTGATGGATAGTTTTGTGCCAGAGAATGATGGTTCAATAACTTTGACTGGACCCAGGTCAACCTTTAAGTTGCCTGCTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGAGGGGTTGACGTGGCTCTGGTCTTTGCATAGTCTGGGAAAAGGAGGAATCTTGGGGGATGATATGGGTTTGGGGAAAACAATGCAGATCTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGCATTGGTTGTAGCTCCCAAAACATTATTGCCTCATTGGATCAAAGAATTGTCAGCAGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACTTCAACAAAACTTAGAGAATACGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACTTACGATATTGTTCGCAACAATTCTAAGTCCTTACGGGGGAGTAATTATTTAAATGACGACGAAAGTGAAGATGATGCTACATGGGACTACATGATACTGGATGAGGGACATCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATCAGTGGCACACCATTGCAAAATAATTTTAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTGGGGGATAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTCCGTGGAAATGACAAGCATGCTTCTGACAGGGAAAAACGTTTTGGTTCATCTGTAGCACAGGAACTAAGAGATCGTATTCAGCCTTACTTTTTAAGACGAATGAAGAGTGAGGTTTTCAGTCAAGATAATGAGAAAACAACTGCAAAACTTTCTCAAAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTGTTCAGCGGTATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTCTAAAGAAAATATGTGATCATCCACTTCTGTTGACCAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGAATCAATGCTAAAGCCAGACGAAGCTAATGTTGCAACAAAATTGGCAATGCACATAGCCGATGTTGGTGACACAGAAAGGTTTAAAGATGAACAAGACGTGTCATGCAAAATTTCCTTTATTATGTCATTGTTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCATGACGCTTAATCTTATTCAGGAATGCCTACAGTCCCAAGGTTATGACTTCTTACGAATTGATGGCACAACAAAAGCCAATGACAGACTAAAGATTGTCAATGATTTCCAAGAAGGTGTTGGAGCTCCTATATTTCTCTTGACGTCTCAGGTTGGTGGTTTGGGACTTACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGGTGTGTCTTGAAGTACTTTAAATTTGTTGTAAAATATACAAAAAGAAGTGGCATTATTGTTGTCTCTGTAGCCATATTTTCTGCCAATAGCTTTATTAATGCTACGGATAATCAAAGTGTAGACCGTGCATATCGAATTGGGCAAAAGAAAGATGTCATTGTATATAGACTAATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATATAAGGGCGGATTATTCAAAACTGCTACTGAGAAGAAAGAACAGATTCGGTACTTTAGCCAACAGGATCTTAAGGAGCTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAATATACAGTTGATGACTCTTTCAAAGCACATATAGAGTTCTTGAAGAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCAAAGACAGGGCCGCAGGTTGGTGATGAACTTGAGGATGATGAAGTTCCAAGGAATCATGCGACTAGGTATGTTGGGACTTCGAGATCATCTTCAAATGACCATATTACTTACGGCTCTGAGTTTGCAATTAATCCTAAGAATGTTACCACAAGCAAAAAAGGTTCATCTCCAAGCAGTGCTGGTAAATTGACGGAGTCAGAAATCAAGGATAAAATTAATCGGCTCTCTCAAACACTCTCAAATGCGGCTATGATTTCTAAGTTACCTGACAAGGGCGAGAAACTGCAGAAGCGGCTTGCGGAGCTGAGTTTAGAGCTGGCTGATCTGAAAAGTGAAAGAAATGTGATTGATTTGGATGATTTTACCACTGAATTTGAACAAGGGTTGAATGTATAG 3402 0.4189 MANNKSSKKPVSLNDSHYRFLQEHSAPPKPSSKPFDEESIKSSARKQEHHSIPQFSAITDFDSPIASEEKHEPIKAHEAEEVVAPSYDISTTVLGQYSDKKHEPIIFQEEEQEEGSSDVFISSTTQWWDSYVDDHRTITKNGTRRMLGKNVYNIDDLAFVHEWTVEENGTNSDLDALNVDILAKVGEDVSGAAPMGQNTDEKHEPAFFEEEAPADVFDFPPKEERTTKMKVKGRRRLCKIVHEDAGKSVAVDESKFDELIDLDSPIPVPKNVVQVEESGGKNEIRDILTELNAKFELLSVERKPRPKRVEGLVVGKESYDDEGLEYGSAGSSFSPQQESLAEGNKNDDGDRIEYDSDDSVQVMDSFVPENDGSITLTGPRSTFKLPAKIAKMLYPHQREGLTWLWSLHSLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGSNYLNDDESEDDATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNFKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRFGSSVAQELRDRIQPYFLRRMKSEVFSQDNEKTTAKLSQKQEIIVWLRLTSVQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMESMLKPDEANVATKLAMHIADVGDTERFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRMTLNLIQECLQSQGYDFLRIDGTTKANDRLKIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPRCVLKYFKFVVKYTKRSGIIVVSVAIFSANSFINATDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEKKEQIRYFSQQDLKELFSLPKEGFDVSVTQRQLNEEHDRQYTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTGPQVGDELEDDEVPRNHATRYVGTSRSSSNDHITYGSEFAINPKNVTTSKKGSSPSSAGKLTESEIKDKINRLSQTLSNAAMISKLPDKGEKLQKRLAELSLELADLKSERNVIDLDDFTTEFEQGLNV 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04210 1133 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 753 946 IPR001650 -
Vimu11g04210 1133 FunFam Protein CHROMATIN REMODELING 24 372 650 - -
Vimu11g04210 1133 Coils Coil 1094 1121 - -
Vimu11g04210 1133 SMART ultradead3 388 591 IPR014001 -
Vimu11g04210 1133 MobiDBLite consensus disorder prediction 324 351 - -
Vimu11g04210 1133 MobiDBLite consensus disorder prediction 1048 1065 - -
Vimu11g04210 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 960 IPR027417 -
Vimu11g04210 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 630 IPR027417 -
Vimu11g04210 1133 CDD SF2_C_SNF 742 907 - -
Vimu11g04210 1133 MobiDBLite consensus disorder prediction 1 76 - -
Vimu11g04210 1133 MobiDBLite consensus disorder prediction 1048 1069 - -
Vimu11g04210 1133 MobiDBLite consensus disorder prediction 30 48 - -
Vimu11g04210 1133 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 580 IPR014001 -
Vimu11g04210 1133 Pfam SNF2-related domain 410 700 IPR000330 GO:0005524|GO:0140658
Vimu11g04210 1133 Pfam Helicase conserved C-terminal domain 750 896 IPR001650 -
Vimu11g04210 1133 PANTHER SNF2/RAD54 FAMILY MEMBER 269 1108 - -
Vimu11g04210 1133 Gene3D - 377 651 IPR038718 -
Vimu11g04210 1133 Gene3D - 652 982 IPR027417 -
Vimu11g04210 1133 SMART helicmild6 779 896 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04210 Vimu-Chr11 63600465 63610762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04210 410 949 RAD5 or RAD16-like Gene Family AT5G43530 23.780 4.21e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu11g04210 SNF2_N 1.3e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04210 K20093 - gmx:100779283 1521.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04210 11 63600465 63610762 Vimu11g04210 11 63600465 63610762 ECH