Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04204 ATGGAAGATGAGAGCCATAACACTTTGCCAAATGGTTTTAACTCTAACAAAGAACAAGACCGGTTTCTCCCCATTGCCAACGTCGGAAGAATCATGAAAAAGGTTATTCCTTCCAATGGAAAAATCTCCAAAGACGCAAAGGAAACTGTCCAAGAGTGTGTCTCTGAGTTCATCAGCTTTAAATATAAAGAGATTGAAGGTGAAAAACTTAACATTCCAAAGCAACTTCGTTCTGAGCAACGGCTACAACAGCACCAACAAAATAACAGTAACAGTAGCCAAGACGATAATAACCAACAATTCAATGGTGCTTATGCCTCCACCAATCTCATTTCTCAGCCTCCATTTGTCACCACTGATCAGAAGTTTCCGTTACCCTTTTCCCCAAACTCCATTCAGAATCACCAGATTGATTCTGTTGGGCACTGGTACGAATAA 438 0.4064 MEDESHNTLPNGFNSNKEQDRFLPIANVGRIMKKVIPSNGKISKDAKETVQECVSEFISFKYKEIEGEKLNIPKQLRSEQRLQQHQQNNSNSSQDDNNQQFNGAYASTNLISQPPFVTTDQKFPLPFSPNSIQNHQIDSVGHWYE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04204 145 MobiDBLite consensus disorder prediction 74 103 - -
Vimu11g04204 145 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04204 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 60 IPR003958 -
Vimu11g04204 145 Gene3D Histone, subunit A 12 66 IPR009072 GO:0046982
Vimu11g04204 145 MobiDBLite consensus disorder prediction 76 103 - -
Vimu11g04204 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 64 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu11g04204 145 SUPERFAMILY Histone-fold 16 60 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04204 Vimu-Chr11 63564577 63565257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04204 17 143 CCAAT-HAP3 Transcription Factor Family AT2G13570 43.956 2.42e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04204 K08065 - gmx:100778216 187.193