Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04198 ATGAAGATGCAAGGCTGTGAGGTTGAGGCCATTGGCATAAACTACACCATCCACACACACAAATCGGAGCACCCTTTTAAAATCTTCAGCAAATCTGCACAACTTGATACTGAACAAGATGGTAAAGAGCCAGAAGGGGAAGCAGAAGCTGAACAAAGTTGCAGTGGAGTAAGGCATGTGCTGAAGAAAGTGAGTTTCCAAGCCAAACCATGGGAGATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGCAAATCATCACTGCTTGAGATTCTAGCCGGCAAACATAGCCCTCAAGGTGGTACTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTCAGTTCAGGAAGCTTTCAGGGTATGTGACACAAAAGGATACTTTGTTTCCTTTGCTTACAGTTGAAGAAACCCTGATGTTTAGTGCAAAGCTGAGGCTGAAGTTTTCTCAGGAGGAACTCTGCTCCAGGGTCAAGTCATTGATTAAGGAGCTTGGACTTGACCACGTTGCTGGCACTAGAATTGGCGATGATAGGGTCCGAGGCATATCTGGTGGTGAGAGGCGCAGAGTTTCCATTGGTGTTGAAGTCATACATGAACCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGACTTGACAGTACTTCAGCTTTGCAAATAATTGACATGCTTAAGGTCATGGCTGACACAAGAGGGAGAACCATAATCCTTAGTATCCATCAACCCGGGTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCCAATGGAAGTGTTTTGCACCATGGAACTGCTGAGTTGCTTAGTGTAAATCTAAGGTTGATCGGTTTGGAGCTTCCTCTTCATGTCAATGTAGTTGAATTTGCCATTGAGTCCATCGATACCATTCAGCAACAACAGACATGTGTGCCAGTTCAGGTGGAAACTCCAAGGCAATTGCCAGGGACAATGCAACAGAAAAAAATCGGTGATGAAGCTGGTGAGATTAGGAACGGTAAGTTTACCTTGCAACAGCTGTTTCAGCAATCCAAGGTAATTGATGAAGAAACCATCTTCGTTGGAATGGATTTCACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACCCATAGGTTTTCCAAGAACATATTTCGTACAAAAGAGCTATTTGCATGTAGGACAATTCAGATGCTGGTTTCTGGGTTGGTTGTGGGATCCATCTTTTGTAACCTTAAGGATGATCTAGAGGGAGCTTATGAAAGGGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTGTCAAGCAGCATAGAAGCTCTACCCATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAAACATCTAGTGGAAGCTACCGTGTGTCATCGTATGCAATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCTCAATGCCCTTGTACTGGATTGTTGGTCTCAACCGGAATTTCTTGGCCTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTACACGGCCAATTCAGTTGTGGTGTGTTTTAGTGCTCTGGTGCCTAATTTTATTGTTGGGAATTCAGTGATTGCTGGTGTTATAGGGTCATTCTTCTTGTTCTCTGGGTACTTCATATCAAAGCAAGAAATTCCAAACTACTGGATTTTCATGCATTATATATCATTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAACGAGTTCTCCAACTCGGGGAAGTGCTTGGAGCACATGTTTGGGGCATGTCTTAAGAGTGGAGAGGATGTCCTTGAAGAAGAAGGGTACGGGGGAGAGAGTAACAGATGGAAGAATGTTGGGGTCACTGTGTGTTTCATCTTGGTTTACAGGTTCATCTCTTATGTCATTCTTAGATACAGATGTTCCCAAAGGAGATTTGGCAAGGTTATCACCAACTAA 1947 0.4289 MKMQGCEVEAIGINYTIHTHKSEHPFKIFSKSAQLDTEQDGKEPEGEAEAEQSCSGVRHVLKKVSFQAKPWEILAIVGPSGAGKSSLLEILAGKHSPQGGTVLVNHKPVDKAQFRKLSGYVTQKDTLFPLLTVEETLMFSAKLRLKFSQEELCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHEPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSVNLRLIGLELPLHVNVVEFAIESIDTIQQQQTCVPVQVETPRQLPGTMQQKKIGDEAGEIRNGKFTLQQLFQQSKVIDEETIFVGMDFTCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLVSGLVVGSIFCNLKDDLEGAYERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFSMPLYWIVGLNRNFLAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISKQEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEHMFGACLKSGEDVLEEEGYGGESNRWKNVGVTVCFILVYRFISYVILRYRCSQRRFGKVITN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04198 648 FunFam ABC transporter G family member 5 46 306 - -
Vimu11g04198 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 282 IPR003439 GO:0005524
Vimu11g04198 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 628 - -
Vimu11g04198 648 SMART AAA_5 70 259 IPR003593 GO:0016887
Vimu11g04198 648 Gene3D - 49 304 IPR027417 -
Vimu11g04198 648 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Vimu11g04198 648 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Vimu11g04198 648 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Vimu11g04198 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 269 IPR027417 -
Vimu11g04198 648 CDD ABCG_EPDR 55 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04198 Vimu-Chr11 63525024 63527723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04198 72 293 Calmodulin-binding Proteins AT2G36910 26.923 3.38e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04198 K05681 - gmx:100789722 1181.39