Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04187 ATGCCGGCGTGGTGGAGTAGGAAGTGGAGCAAGAGCAAGGAGGAGCACGAGGAGGCCGACGAGGTCGAGGAGGAGGAAGTGGAAGAGCCACGTGGCGGGTTTCAGTTGAGTTTCTTGAAGTCTCCGGTGGCCGTTAGGAGGGGTGACGTCAGCAAGAGTAAAAGGAACAAGAAGAAGCCCAAGAGCTTCGACGACAAGCTGAAAGGGGTTCCGTTGCCTCGTCCCACTCACAGTCACAGCGATCAAATTCAAACGTTTGCATCTCTCTCGGTGTCGGGTTCCAGCGTCAGCTCATCCACCTCCTTCGACGATCACCCAATTTCGCCTCACTTTAATGCCAACAGAGGACAAGATGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCTGGTCCTGGGTCAAGAGGACCTACTAGTCCTACCTCACCGCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACGGGGAGGCAAGACGAGGGAAGGAGTGAATGTCATCCGTTGCCTCTTCCTCCTGGTTCTCCAACTAGTCCTTCTTCTGTGCTTTCTAGTTCCATCACACGACCAAATGGACTGTTGGAAAATGCTACCAGCAATGTGTCCAAGTGGAGAAAAGGAAAACTTCTAGGACGAGGAACATTTGGGCACGTGTACCTGGGATTCAATAGTGAAAATGGACAGATGTGCGCAATAAAAGAAGTCAAGGTTGTCTCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTAAATCAGCTTTCGCACCCTAATATTGTTCAATACTATGGGAGCGAACTGGTAGAAGAATCACTTTCCGTATTTTTGGAATTTGTCTCTGGTGGTTCCATCCAGAAATTACTTCAGGAGTATGGTCCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGCAAGAAATACCGTACACAGGGATATCAAAGGGGCAAACATACTAGTTGATCCTAATGGTGAAATCAAATTGGCCGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTCCGGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCTAAACCTCCTTGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTCTCCAATGATGCAAAGAATTTCATCAAGTTATGCTTACAAAGAGACCCATCGGCTCGTCCGACGGCCCAAATGTTACTAGACCAGCACCCGTTCATTCAAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGAAGCTTTCCCTTACATGCTAGATGGAAGCCGGACACCGTTCCTGACATGCTGCAATTGTGCTGAAGTTTGGATGTCTCAAGATGTTATAAAGATATCATCTCTTGGCTTGCTTAGGTCTTTCAGTCATCCTGTGTTAGAGTCCCATTCGAACCGAACAAGTATAACTTCGTTTGATGGAGATTATGCATCAAAGCCAGCTCTTGCAGCCCCACGTGCATCAAGAAGTCCAAGAGATAACACAAGAATGAACATATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAACGCACCAGAGTTGTTACTTTTCTCCTCCTCATCCAGCTTACACAACAATGGGACAAAGTAGTTACACTTCGAATGACGCATGCTCGTATCCCATAAGGTCAAATGCACCGTTGACTCTTGATCCTTGGCATGAAACATCTCGGTTCAAAGCCAATACACCACCTGGTGGATCACCAAGAATGAGACTCATTTGA 1926 0.4585 MPAWWSRKWSKSKEEHEEADEVEEEEVEEPRGGFQLSFLKSPVAVRRGDVSKSKRNKKKPKSFDDKLKGVPLPRPTHSHSDQIQTFASLSVSGSSVSSSTSFDDHPISPHFNANRGQDEVRFNVRSKSPGPGSRGPTSPTSPLHPRLHALSLDSPTGRQDEGRSECHPLPLPPGSPTSPSSVLSSSITRPNGLLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNQLSHPNIVQYYGSELVEESLSVFLEFVSGGSIQKLLQEYGPFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQMLLDQHPFIQDQSATKAANVSITREAFPYMLDGSRTPFLTCCNCAEVWMSQDVIKISSLGLLRSFSHPVLESHSNRTSITSFDGDYASKPALAAPRASRSPRDNTRMNISLPVSPSSSPLRRYGPTHQSCYFSPPHPAYTTMGQSSYTSNDACSYPIRSNAPLTLDPWHETSRFKANTPPGGSPRMRLI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04187 641 SUPERFAMILY Protein kinase-like (PK-like) 202 544 IPR011009 -
Vimu11g04187 641 SMART serkin_6 204 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04187 641 MobiDBLite consensus disorder prediction 1 191 - -
Vimu11g04187 641 MobiDBLite consensus disorder prediction 544 574 - -
Vimu11g04187 641 MobiDBLite consensus disorder prediction 77 107 - -
Vimu11g04187 641 FunFam Mitogen-activated protein kinase kinase kinase 202 485 - -
Vimu11g04187 641 Gene3D Transferase(Phosphotransferase) domain 1 201 481 - -
Vimu11g04187 641 MobiDBLite consensus disorder prediction 553 574 - -
Vimu11g04187 641 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 47 469 - -
Vimu11g04187 641 ProSiteProfiles Protein kinase domain profile. 204 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04187 641 Pfam Protein kinase domain 205 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04187 641 ProSitePatterns Protein kinases ATP-binding region signature. 210 233 IPR017441 GO:0005524
Vimu11g04187 641 MobiDBLite consensus disorder prediction 58 72 - -
Vimu11g04187 641 CDD STKc_MEKK1_plant 203 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04187 Vimu-Chr11 63447340 63452564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04187 1 486 MAP Kinase Kinase Kinase AT1G53570 59.763 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g04187 Pkinase 1.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04187 K04421 - gmx:100787064 891.338