Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04186 ATGGCGGGGAAACTGGCAAAGGCAGCTTATGATGCAAAGATGTTAAAGCTTCTGAGAGAGTACAGTCAGGTGCTGGTGGTTTCATCTGACAATGTGGGTTCAAATCAGCTTCAGGGCATACGGAGGGGACTCCATGCTGATTCAGTTGTGGTGATGGGAAAGAACTCCCTGATGAAACGCTCTATCATCTTGGATGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACATAAGGGAGGTCAGCGAACAGATTGCCAAGTACAAGGTTGTTCAACCTATTCTAATGTGTCCCAAGTATATGTCACATGACACATACCAGAATTGTTCCTATATGCAATCCGGACAGTTACCTTTGGGCCTTACATGTTGTAATCAGCAGCAGTCTTTGCAGGTTTCTGAGCCTTTTCTTGTATGCTCAAAATTCCAGCCACACCAACATTGTTTCATGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGCAACTTGTGA 567 0.4497 MAGKLAKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSLMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDIREVSEQIAKYKVVQPILMCPKYMSHDTYQNCSYMQSGQLPLGLTCCNQQQSLQVSEPFLVCSKFQPHQHCFMMRSRQFLMTSIWSPLLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04186 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 138 - -
Vimu11g04186 188 FunFam 60S acidic ribosomal protein P0 4 135 - -
Vimu11g04186 188 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
Vimu11g04186 188 Gene3D - 4 136 IPR043141 -
Vimu11g04186 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04186 Vimu-Chr11 63438409 63439188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04186 7 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.990 2.37e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04186 K02941 - mnt:21409050 157.918