Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04182 ATGGCTGTATCGAGATTGAAACCGGGGTTTCGGTTCCACCCCTCGGGTGTCGAGTTGGTTCTGTACTTTCTGAAAAGGAAAGTGATGGGGAAAAAGTTCTTTGGTGGTGCCATTGCTGAACTTGACATATACAAATATGCTCCATGGGATCTCCCAGCTCAGTCTTGTCTAAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCACTGGAGAAGAAATATGGCAGTGGGTGTAGGATGAAGCGCGCTACTGAAATTGGGTACTGGAAAGCTACTGGGAGGGATAGACCTGTTCAGTACAATAATAAAACGGTGGGGAAGATTAGAACACTGATATTTCACAAGGGTAAATCGCCTAAAGGTGAAAGAACTAATTGGGTTATACATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGCACAGGGTGGCTGTATGCTGCCACCGACTGTGTTGCTGTTGCATTCATTGTTTTGCCTTGTACCTGTTGAGAGATTTAATTCCTATGTAGTCTGCAAGGTATTTGAAAAGGAAGGTCTTGGTCCCAGGAATGGGGCGCAATATGCAAGGCCATTTAATGAGGAAGAGTGGAGCGATGAAGAACTGGAAATACCTTGTACTGCTTCAACTGCACCAGTTCCCATCTTGCCTATGACATCCGATGCTTCTGTCCTAAAGGACAATCCCGTCCCTGCTAGTGGATGTACATCATGTCTATCAAGATCAATGCCTTTACCTGGCACCGCGGATCCTTCTGATCCAAATGATCAAGTTGTTAACAATGATGATGAAGATATTTTACGGATGAATGATATTTCTGAAGATGGTGACAAATTGTTTGAGAAAGCTGATAATGATCAAGAAAACATTGATGGGGGTGTACCACCTTTAGCCGAATTTTTCGTGGGCTTGGATGCCTACTTAGATGCTCATCATACTGTTATATCCTCTGGTCAGAATGCTGAATTTAGCACAAACGGAATAAATACTACAGATGATGTCTGGAGCTTGGACTTTATAGAGTTATCTGATCTAGACATCTCATTGGTCTAG 1062 0.4331 MAVSRLKPGFRFHPSGVELVLYFLKRKVMGKKFFGGAIAELDIYKYAPWDLPAQSCLRTGELEWYFFCPLEKKYGSGCRMKRATEIGYWKATGRDRPVQYNNKTVGKIRTLIFHKGKSPKGERTNWVIHEHRLEDKDLADKGIAQGGCMLPPTVLLLHSLFCLVPVERFNSYVVCKVFEKEGLGPRNGAQYARPFNEEEWSDEELEIPCTASTAPVPILPMTSDASVLKDNPVPASGCTSCLSRSMPLPGTADPSDPNDQVVNNDDEDILRMNDISEDGDKLFEKADNDQENIDGGVPPLAEFFVGLDAYLDAHHTVISSGQNAEFSTNGINTTDDVWSLDFIELSDLDISLV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04182 353 SUPERFAMILY NAC domain 4 179 IPR036093 GO:0003677|GO:0006355
Vimu11g04182 353 ProSiteProfiles NAC domain profile. 6 180 IPR003441 GO:0003677|GO:0006355
Vimu11g04182 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 243 - -
Vimu11g04182 353 Gene3D NAC domain 16 183 IPR036093 GO:0003677|GO:0006355
Vimu11g04182 353 MobiDBLite consensus disorder prediction 246 266 - -
Vimu11g04182 353 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04182 Vimu-Chr11 63392910 63397874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04182 1 282 NAC Transcription Factor Family AT5G64060 48.097 2.25e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g04182 NAM 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04182 - - vra:106770001 647.506