Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04172 ATGGACACCAACCAGAACACCACCACAAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACAAACGAACAACATCAACATCAACATCATCATGACCATATTATTCTCCAAGTCCAAGACCCTCTTGCTTCTGGGATTTGGTCCAACAGCTACCCCCACAGTCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCACGACAACCTCGTCCGTTGTAGCCCCACCCTCTTCCTCGGGGTTCCTTGGAGACATACTGGGTGTTCACAGCATGGAAGAAGACGAGGAGCCGGAAGAAGAGCTGGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCGGTGGACATCGACCCCGCCACCATCCGTAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCATTCCTCACCCTTCCCAGCCACCACAATGCATTGGTTTTGCCACCACAAACGCTAGCACCTTGCTATTAGCCCCTTCCTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACCGCCGTAACCGCAGCCACGGCCTCTTCCTCCTCGATGGACATGCCTGCGGGACTCGGATTCGACGGCCATGGCCACGGTTGTGACGGTTCCTCCAGCTTTAACCAGCACGAGGTAATCAGTGAATAA 840 0.5167 MDTNQNTTTSAFTNVNTTWNLEKMETNEQHQHQHHHDHIILQVQDPLASGIWSNSYPHSHNPNLLQMHQTPPTTTSSVVAPPSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSMDMPAGLGFDGHGHGCDGSSSFNQHEVISE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04172 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Vimu11g04172 279 MobiDBLite consensus disorder prediction 62 85 - -
Vimu11g04172 279 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Vimu11g04172 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 199 IPR036638 GO:0046983
Vimu11g04172 279 CDD bHLH_AtIND_like 141 198 - -
Vimu11g04172 279 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 229 IPR045843 GO:0003700|GO:0006355
Vimu11g04172 279 SMART finulus 146 195 IPR011598 GO:0046983
Vimu11g04172 279 MobiDBLite consensus disorder prediction 62 83 - -
Vimu11g04172 279 FunFam BHLH transcription factor 143 205 - -
Vimu11g04172 279 Gene3D - 143 201 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04172 Vimu-Chr11 63318693 63320428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04172 109 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.775 2.36e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g04172 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04172 - - gmx:100775296 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04172 11 63318693 63320428 Vimu11g04172 11 63318693 63320428 ECH
Vimu11g04172 11 63318693 63320428 Vimu10g01766 10 24743615 24744319 PCT