Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04170 ATGATTTTTTCTTACTTGTCTGACTTTCTTTGGAGTAGAAGTAGTAGCCCAAGCCGGAGTAGAAGCCGGAGCAGGAGCAGGAGCAGGAGCCCTCGTAATTTTAGGTGGGATTCAAGAACCAATGATAGACGTGGAATGAGGGCAGCATGTAGATATTTTGCTGATGGGAAATGCAGAAGAGGAAGTAAATGTCTCTTCCTTCACGATGACAATAAAAAATTTGATGACAGCAGGGTAAGTTCACGCAGGCAAGATGAATCTTTCTTATATTCTAGTCCAAGTGGTGGAGATCAGGCTTTGGATAGGCCAAAATCAAGTGAAGTTAGTCTCCATGGAAGGCTAATGGATGATGGACAGGATTTAGATGGTAGTGTGGCTGGTGCAGATAACAAAAAAGGAATTATGGTTGACCCAGAACCTGGATTTAATACTTTGCCCGTTGATGATGAACGGGGCCATAGCTTAGACAAGAACACAGTGCATGGTGAATCAGCATTTTCAAGTGATGTGAAGGAGGCCAAAAATGATAGTTCCAATGTTCACACTTGTCAGTCAGTAGGCGCAGACATTTGGCCTGGTAATGAAAAAATGTGTCATAATTGGAATTATGGTGTGACATCTCCCATCCCTATTAAAGAAGAGTATGAGCAGAGTAAGCAACAAGTTTCTCCAGGTAATCACATGCTTGATGTTCCACTCATTATGCATCCTTGTCTATAA 720 0.4208 MIFSYLSDFLWSRSSSPSRSRSRSRSRSRSPRNFRWDSRTNDRRGMRAACRYFADGKCRRGSKCLFLHDDNKKFDDSRVSSRRQDESFLYSSPSGGDQALDRPKSSEVSLHGRLMDDGQDLDGSVAGADNKKGIMVDPEPGFNTLPVDDERGHSLDKNTVHGESAFSSDVKEAKNDSSNVHTCQSVGADIWPGNEKMCHNWNYGVTSPIPIKEEYEQSKQQVSPGNHMLDVPLIMHPCL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04170 239 Pfam CCCH-type zinc finger 50 69 IPR041367 -
Vimu11g04170 239 MobiDBLite consensus disorder prediction 12 39 - -
Vimu11g04170 239 SUPERFAMILY CCCH zinc finger 47 69 IPR036855 GO:0046872
Vimu11g04170 239 MobiDBLite consensus disorder prediction 85 137 - -
Vimu11g04170 239 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 13 222 - -
Vimu11g04170 239 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Vimu11g04170 239 Gene3D - 35 99 - -
Vimu11g04170 239 SMART c3hfinal6 45 70 IPR000571 GO:0046872
Vimu11g04170 239 MobiDBLite consensus disorder prediction 104 118 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g04170 zf-CCCH_4 4.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04170 - K22909 vra:106759211 288.5