Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04167 ATGGATCATCTCTTCCTCTTCTCTCTCTTCCTGCTCCTAACCCTCTCCGCCGCCCACCGAAAATCCCCGCCTGTCGCCGCCGTCAAATCTGTCACACCGGAGATCCAACAAGCCTGCGCCGCCACGCGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAAGACCCCAAACTCCCGCCAAACCCGACCTCTCTCCAGTTAATCCAGTCCGCCATCACCATCTACTCTGAAAACCTCGCCACCGCGCAGTCCATGGTGAAATCCCTCCTCGATGGTGCTGCCGGCAGCCACAACCTCACCGTGGCCGCCTCCACCTGCTTGGAAGTGTTGGACAACTCGAAGCACCGCTCTTCCCTCGCCAGCGACGCTCTGCCACTCGGAAAAATCAAGGACGCGCGCGCGTGGCTGGGCGCGGCGCTCTCGTACCAGTACGACTGCTGGAACAGCCTCAAATATGCCAACGTGTCCGCGGCCGTCGGCAAAGCGATGGCCTTCATCGACTCCCTTGAATCTCTCTCCAGCAACGCCCTCGGCATGGCCTTCTCCCTCGACGCCTTCGGAAACGACACCGCTTCGTGGAAGCCTCCCGCCACCGAGCGCAACGGCTTCTGGGGCAGCCTCGCCTCCGGCGACGCCAGCGCCGTGGGAGGTGTTCCTCCCAACTTGAAACCCGATGTTACGGTTTGTAAAGACGGAGCTGGCGGCTGTTATAAGACCATACAAGAGGCCGTTAACGCTGCGCCAGATAACGGGGATGGGAAGAAGCGGTTTGTCATTCTCATAAAAGAAGGAGTTTACAAGGAGACCGTTAGGGTTCCGCTGGCGAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGCAAAACGGTTATAACCGGTGATGCTAACGTGGGGCAACCAGCCATGACAACTTACAACTCTGCCACCGTCGCGGTTCTTGGGGATGGATTCATGGCAAAGGATCTGACGATTGAGAACACGGCGGGTCCTGACGCACACCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGATTGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCCCTGCGCCAATTCTACAAGTCATGTCGCATTCAGGGCAACGTCGACTTCATCTTTGGAAACGCTGCTGCAGTTTTCGAAGACTGTCTCATCCTGGTTCGTCCCAGGCAAGTGCGTCCAGAGAAGGGCGAGAACAATGCTATCACTGCACATGGCAGAACAGACCCAGCACAACCCACAGGCTTTGTTTTCCAGAACTGTCTCCTTAATGGCACTGAGGAGTACATGGCTTTGTATCACAAGAACCCTAAGGTGCACAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCCAGAACGGTTTTCGTTAATTCAGAGCTGGAGGTGATTGTGACAGCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCCCTCAAGACACTTTACTATGGGGAATTTGGGAACAAGGGACCTGGTTCTGATCTGTCTCAGAGGGTATCATGGAGTAGTAAGATTCCTGAAGACCACGTCCTGGCCTACTCAGTACAGAACTTCATTCAAGGAAATGATTGGATTCCATCATCGTCCTCGTAA 1620 0.5481 MDHLFLFSLFLLLTLSAAHRKSPPVAAVKSVTPEIQQACAATRFPQQCETSLSQDPKLPPNPTSLQLIQSAITIYSENLATAQSMVKSLLDGAAGSHNLTVAASTCLEVLDNSKHRSSLASDALPLGKIKDARAWLGAALSYQYDCWNSLKYANVSAAVGKAMAFIDSLESLSSNALGMAFSLDAFGNDTASWKPPATERNGFWGSLASGDASAVGGVPPNLKPDVTVCKDGAGGCYKTIQEAVNAAPDNGDGKKRFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPAMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNAAAVFEDCLILVRPRQVRPEKGENNAITAHGRTDPAQPTGFVFQNCLLNGTEEYMALYHKNPKVHKNYLGRPWKEYSRTVFVNSELEVIVTAQGWMPWSGDFALKTLYYGEFGNKGPGSDLSQRVSWSSKIPEDHVLAYSVQNFIQGNDWIPSSSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04167 539 FunFam Probable pectinesterase/pectinesterase inhibitor 51 33 182 - -
Vimu11g04167 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 179 IPR035513 -
Vimu11g04167 539 PANTHER PECTINESTERASE 17 535 - -
Vimu11g04167 539 NCBIfam pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Vimu11g04167 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 183 IPR035513 -
Vimu11g04167 539 SMART PMEI_2 30 179 IPR006501 GO:0004857
Vimu11g04167 539 FunFam Pectinesterase 220 539 - -
Vimu11g04167 539 CDD PMEI-like_3 38 179 - -
Vimu11g04167 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Vimu11g04167 539 Pfam Pectinesterase 225 531 IPR000070 GO:0030599|GO:0042545
Vimu11g04167 539 Gene3D - 220 539 IPR012334 -
Vimu11g04167 539 SUPERFAMILY Pectin lyase-like 223 536 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04167 Vimu-Chr11 63271639 63273954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04167 24 533 Carbohydrate Esterase AT5G09760 63.301 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04167 - - gmx:100819675 875.544