Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04162 ATGCTGGACTCTGATGATGGAGATATTGATGTGTTCTTTGACTCACTGGATAGTTTGTCAGCACAAGATTCTGTTCTAGGCAAAGAAGAGTTTGGCTCTGAAAGGTGTGGTTGTGATTATGGTGACATTTGGGTGAAGGAGCCTGCTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGATTTGGGTTTAGACGACGCTTCTTCATCCAAGGTTTGTTATCAAGAGAGAATGAACCTTGATGACTCATCTATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAATATCAAATGCTTCAATTTTGCATAACGATCAGGTATCTGAGAAGGTTCTCTATGGAGGCAAAGCAGCTTCTGAAGTAAAAATCTCATTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAAGCAGATGCAAACTTTGAAGGAAAAGAGCATGACTTCCCTTCTACAAATCAGGAACACAGAGAAGCTGATTCGCAAGAATTTCAGGATTTTGATATGGGTAAAAGGAAAAGAAAAAACTGGTGGAAACGCTTTGTGAACGAGAGGAAAGGGGGTGAAGGAAATGTTAGATCAAAATTTAACGCAGGGGCAAACAAAACTCGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGCCTATTCAATGGACAAGAAGTTAGAGCTCACAAAGGTGTAATCTGGACCATGAAATTTAGTCCCTGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGTATATGGCGTGTTACATCTCTGGATAAATCCAGTATTTGTTTCACCTCAAAAGACAGCACTTCTAATAGGAAAGTGGAACGTAAAAACACTTCTCCTAAGAAGAAAAACTCATACCAACCCTTCATTTTCCTTCCAAATAGTATTTTTCAAATTGAGGAATCACCACTGCAAGAATTTTTTGGCCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGATTGTAATCAATGTCTAAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTCATTGACTGGGCAAATATACGAGATGTCATAAGTGCTATAAGTTACCAGGAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTACATGGTAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAGTACACAGAGAATTATGATAACAACAGAAGATTCCAAAATTCATATTTATGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCGAAGTCAGGGAGTCAAATGTCGGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAAGACTCCCATGTTTACATATGGAACTTGGATGACTTGGGAAATGCTTCTTCTAAACAGACAAAATCTGAACGCTCCTGTGAGTACTTTTTTTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGATGTGAAAGCATATCAAAGGGGTTCTAGCAGTAACTTTTCCCACCATTCTTCAGAAATGCAAAGCCAATCAGAGCTTGCCCCCCATGAGACTAGAGATCCAGAGCGTTTTTCTCTTGGTAACTGGTTTGCCATTGATGGCACATGCCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCCAGCTGGGATTTACCTATAGCAGAAGATGAATATGATCAGCAGCAGTTATGTCAGAAAAATACTTGCCAAGACAGAATTGTATCAGAAACATGGGGCCTATCAATTGTGGTGGCTGGTTGTGATGGAACTATCAAGACATTCCACAATTTTGGATTACCCATTAGGCTCTAA 2022 0.405 MLDSDDGDIDVFFDSLDSLSAQDSVLGKEEFGSERCGCDYGDIWVKEPASVKERRERFLQDLGLDDASSSKVCYQERMNLDDSSISLGFERIRECSGAISNASILHNDQVSEKVLYGGKAASEVKISLDEVKGCPQGEADANFEGKEHDFPSTNQEHREADSQEFQDFDMGKRKRKNWWKRFVNERKGGEGNVRSKFNAGANKTRRIKVRQNKKRWLEFSGLFNGQEVRAHKGVIWTMKFSPCGQYLASGGEDGVVRIWRVTSLDKSSICFTSKDSTSNRKVERKNTSPKKKNSYQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQCLSVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWANIRDVISAISYQEDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDVHGKKKASGNKITGIQFSQKSTQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNLDDLGNASSKQTKSERSCEYFFSKGVTVAIPWSDVKAYQRGSSSNFSHHSSEMQSQSELAPHETRDPERFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDEYDQQQLCQKNTCQDRIVSETWGLSIVVAGCDGTIKTFHNFGLPIRL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 356 IPR001680 GO:0005515
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 263 - -
Vimu11g04162 673 Gene3D - 224 553 IPR015943 GO:0005515
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 349 - -
Vimu11g04162 673 MobiDBLite consensus disorder prediction 566 581 - -
Vimu11g04162 673 FunFam WD repeat-containing protein 44 212 555 - -
Vimu11g04162 673 SUPERFAMILY WD40 repeat-like 227 663 IPR036322 GO:0005515
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 398 IPR001680 GO:0005515
Vimu11g04162 673 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Vimu11g04162 673 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Vimu11g04162 673 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Vimu11g04162 673 MobiDBLite consensus disorder prediction 141 167 - -
Vimu11g04162 673 PANTHER WD REPEAT DOMAIN 44 6 670 IPR040324 -
Vimu11g04162 673 MobiDBLite consensus disorder prediction 566 587 - -
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Vimu11g04162 673 MobiDBLite consensus disorder prediction 137 167 - -
Vimu11g04162 673 SMART WD40_4 221 260 IPR001680 GO:0005515
Vimu11g04162 673 SMART WD40_4 350 389 IPR001680 GO:0005515
Vimu11g04162 673 SMART WD40_4 309 347 IPR001680 GO:0005515
Vimu11g04162 673 SMART WD40_4 441 481 IPR001680 GO:0005515
Vimu11g04162 673 SMART WD40_4 482 523 IPR001680 GO:0005515
Vimu11g04162 673 SMART WD40_4 391 430 IPR001680 GO:0005515
Vimu11g04162 673 Pfam WD domain, G-beta repeat 311 346 IPR001680 GO:0005515
Vimu11g04162 673 Pfam WD domain, G-beta repeat 227 259 IPR001680 GO:0005515
Vimu11g04162 673 Pfam WD domain, G-beta repeat 352 388 IPR001680 GO:0005515
Vimu11g04162 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04162 Vimu-Chr11 63219085 63222353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04162 313 565 U-box Gene Family AT2G33340 25.969 3.61e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04162 K20241 - gmx:100819135 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04162 11 63219085 63222353 Vimu11g04162 11 63219085 63222353 ECH
Vimu11g04162 11 63219085 63222353 Vimu10g01782 10 24993347 24997908 PCT