Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04160 GTCACTCTACCTTTGACTCTCTCTCTTTTCTTTAAACACTCCTTTCTTGTCCGCTCCATCGCCCACCTCTCTCTTTCTCTCTCTGTCTTCTCACCTCACTTGGCTTCTTTCATTTTTATTTTATTTTATTATCACTTTTTTCTCTCACTCCCTCGCTCGCTCACCACCATGGTTAGAGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCTGTCAGTCTCTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTTCACCATCCACTTCACTCGGCTCACTCCCCCACCTCCACCCACTCCCAATCCCTCCCCTCCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCGCTCGCTTCGCTCAAGATTCCGAAGAGAACCGCGATTTTCTCCTCAAAACGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTCGTTATTGCGTTGGATTTGGTTATCGGAAAAATGGAAGATCGTGAGGGGCTGAAAAGCTTGATACTGAAGGCGCAGGGCCAGGCAGAAAAACAGAGTCTGGATTCTCTGCTCGTCGCTCTACAACAAGGGAACCGTGCCGCACAAATAGCATCGGTTAGGGTTTTGACATCGGTCGCCGTGGACGTGGAATCGAAGCTTTTGATAGCGGAGAAGGAAGGTTTAGTGCCCGAATTACTGAAACTAATCACGCCGGAGAAAGATCCAGATCTAATCGAGAACTGTTTGTCGTGCCTGGTGGCTATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGTGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACATGAGCGTGTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACAGTGTCGTCTACGAAGGAAGGGAGGTTGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAAGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCCCGCCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTCCGGGTTAATTCCAAGTCGTGTCTTTCATCTTACGACACCAAAACCACTCATATTATGCCCTTTTGA 1425 0.5179 VTLPLTLSLFFKHSFLVRSIAHLSLSLSVFSPHLASFIFILFYYHFFLSLPRSLTTMVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSAHSPTSTHSQSLPSKDQILLAISDLQTRADNRFDSLAKIARFAQDSEENRDFLLKTECFVPLLVGFLHNVNGGVEFLEQVVIALDLVIGKMEDREGLKSLILKAQGQAEKQSLDSLLVALQQGNRAAQIASVRVLTSVAVDVESKLLIAEKEGLVPELLKLITPEKDPDLIENCLSCLVAISSPRRSKMKLVCLGAVKVLSKLLCASNMSVSVTEKVLKLVETVSSTKEGRLEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCPPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04160 474 FunFam RING-type E3 ubiquitin transferase 58 138 - -
Vimu11g04160 474 Pfam U-box domain 66 133 IPR003613 GO:0004842|GO:0016567
Vimu11g04160 474 Gene3D - 161 469 IPR011989 -
Vimu11g04160 474 SUPERFAMILY RING/U-box 60 134 - -
Vimu11g04160 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Vimu11g04160 474 PANTHER WDSAM1 PROTEIN 65 462 IPR045185 GO:0061630
Vimu11g04160 474 SUPERFAMILY ARM repeat 178 454 IPR016024 -
Vimu11g04160 474 CDD RING-Ubox_PUB 67 119 IPR045210 -
Vimu11g04160 474 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Vimu11g04160 474 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04160 Vimu-Chr11 63187567 63190026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04160 57 474 U-box Gene Family AT5G64660 52.214 2.43e-140 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04160 - - vra:106764800 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04160 11 63187567 63190026 Vimu11g04160 11 63187567 63190026 ECH