Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04155 TACAAGGCATTTGATGGAGTCAATGGAGTTGAAGTTGCGTGGAGTCAGGTTCAGATTGATGAGGTGTTGCAATCCCCCGGTGACTTAGATAGGCTATATTCAGAATTACACCTCTTGAGATCACTGAAGCACCATAACATAGTAAGATTCTACGATTCCTGGATTGATGACAGGCGCAGGACCGTTAATATGATTACGGAGTTGTTTACCTCGGGTAGCCTCAAACAGTTTCGTCAAAAACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCACAACCCACCAGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGAATCGAAGTAATGCCAAGAGTGTTATTGGAACCCCGGAGTTTATGGCACCCGAGATGTATGATGAAAATTACAACGAATTAGCTGACATATATTCGTTTGGCATGTGCATCCTTGAGTTGGTGACGTCTGAGTATCCTTACAGCGAATGCAGAAACTCGGCTCAGATATACAAGAAAGTTTCATCCGTGAGTATCTCATAA 621 0.4219 YKAFDGVNGVEVAWSQVQIDEVLQSPGDLDRLYSELHLLRSLKHHNIVRFYDSWIDDRRRTVNMITELFTSGSLKQFRQKHKKVDLKAVKGWARQILMGLSYLHGHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLNRSNAKSVIGTPEFMAPEMYDENYNELADIYSFGMCILELVTSEYPYSECRNSAQIYKKVSSVSIS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04155 206 FunFam WNK protein kinase 69 206 - -
Vimu11g04155 206 FunFam Probable serine/threonine-protein kinase WNK1 1 67 - -
Vimu11g04155 206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Vimu11g04155 206 Pfam Protein kinase domain 12 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04155 206 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04155 206 Gene3D Transferase(Phosphotransferase) domain 1 69 204 - -
Vimu11g04155 206 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 202 - -
Vimu11g04155 206 SMART serkin_6 1 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04155 206 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
Vimu11g04155 206 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04155 Vimu-Chr11 63144991 63145919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04155 1 202 MAP Kinase Kinase Kinase AT3G51630 70.443 8.94e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu11g04155 Pkinase 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04155 K08867 - pvy:116141630 363.614