Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04154 ATGGAGTTCCTGGACGAGGACGCGAGGCCAAGGTTCGTGTTCCAGTCCGGTGCCGTTGCAAGCACCGAACCACCGTATCCGGACCACAAACCTACCAAACCGTTCCTCTTCGTCACCATTTCTCTCTCTTCGCTCTTCCTCGCTCTATCTCTCTTCTTCCTCGAATCCGAACCCTTCAAATCGCTCTTATTCTGGCTCGCGCTCTCTCTCCTCATCGGCCCCTTCGCTCCCCCATCCCTCACCGGCGGCGACATCCGCGTCGGCCTCGGCGAGGTCGTCAACTTCCCTGATCCGGAGCCCGAAACCGACGACGACGCTAGGAAGCCCCCGCAGCGGCGATCCAGGCAGCGGAGGCCCGAGGAAGTCGCCGCCATCGGCCCAGTTGTGTCCGTCAGCACCGCGGAGAAGAGAGGGGGAGGCGGCGGAGTGGAGAAGGTTTCGACGGTGGTGGAGGAGAAGGATTGGAGCGAGGAGGATGTGGAGGTGCTGAAGAAGCAGCTGGTGAAGAATCCAGTAGGGAAGCCAGGGCGGTGGGAGGCTATAGCGGCGGCGTTCGGCGGAAGGCACGGTGTGGAGAGTGTGATAAAGAAGGCAAAGGAGTTGGGGGAGAAGAAAGTGGATGATTCGGATTCTTATGCATTGTTCTTGAAAAATAGGAAGGCGTTGGATAAGAGGGTTGTGGAGGAGAATGGGGGTGAGGACTCGGTGACGGTGGAGAAAGTTGTTGAGAATGGTTGGAGTTCTGGCGAGGATATCGCGTTGCTGAATGCATTGAAAGTGTTTCCTAAGGATGTTTCAATGAGGTGGGAGAAGGTTGCTGCGGCGGTTCCCGGGAGATCCAAAGCTGCTTGCATGAGAAGATTTACTGAATTGAAGAAAGGGTTTCGGAATGCAAAAGCTGCAGCCGAGTGA 912 0.5691 MEFLDEDARPRFVFQSGAVASTEPPYPDHKPTKPFLFVTISLSSLFLALSLFFLESEPFKSLLFWLALSLLIGPFAPPSLTGGDIRVGLGEVVNFPDPEPETDDDARKPPQRRSRQRRPEEVAAIGPVVSVSTAEKRGGGGGVEKVSTVVEEKDWSEEDVEVLKKQLVKNPVGKPGRWEAIAAAFGGRHGVESVIKKAKELGEKKVDDSDSYALFLKNRKALDKRVVEENGGEDSVTVEKVVENGWSSGEDIALLNALKVFPKDVSMRWEKVAAAVPGRSKAACMRRFTELKKGFRNAKAAAE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04154 303 FunFam Myb family transcription factor 241 300 - -
Vimu11g04154 303 ProSiteProfiles Myb-like domain profile. 238 292 IPR001005 -
Vimu11g04154 303 CDD SANT 155 201 IPR001005 -
Vimu11g04154 303 MobiDBLite consensus disorder prediction 91 121 - -
Vimu11g04154 303 Pfam Myb-like DNA-binding domain 245 291 IPR001005 -
Vimu11g04154 303 MobiDBLite consensus disorder prediction 100 120 - -
Vimu11g04154 303 SUPERFAMILY Homeodomain-like 153 192 IPR009057 -
Vimu11g04154 303 SMART sant 242 294 IPR001005 -
Vimu11g04154 303 SMART sant 151 204 IPR001005 -
Vimu11g04154 303 CDD SANT 246 292 IPR001005 -
Vimu11g04154 303 Gene3D - 149 207 - -
Vimu11g04154 303 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 136 301 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vimu11g04154 303 Gene3D - 240 303 - -
Vimu11g04154 303 SUPERFAMILY Homeodomain-like 242 293 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g04154 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04154 - - gsj:114413206 462.611