Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04150 ATGGATTATGAGGAATTTGATTTTTCGTTTGGTTCTCCTTATATGAACCAACTCCATGAGTGTTGCTTAGAAAATGCATTCCCATTTCAAACAGAAGATATATCATCACCAAATACCATAATGGATGAAATGTTTGGTGAAGAGTCTATGGAGGGCTTGCTTCTGCAACACACAAACAACCAGGACTTTGGTTTCATGAATCACAATGATCCACCGGAGATTGAATTCTGTGATGGATTTGGCTTTAGTCCCGAGGAAAATGTGCATGTTTCAATGGAAGAAGATGACGGGGGTTGTTATTTGAAGGGAATCCAAGCAGAGCTGATGGAACAGACTAGTTTAGCTGATCTTTTGTTAACAGGAGCTGAAGCTGTTGAAGCACAAAACTGGGACCTTGCTTCAGACATAATTGAGAAACTCAACAATGCATCATCTTTAGAAAAGGGTGATGGTTTGTTGAACAGGTTGGCTTATTTCTTTGCTCAGGGTCTGTATTATAAAAGTACAAATGACCCTGAACTGTTGATGCAGCGTGGTGCTGTTTCTGCACACAGAGATGCTTTTTGTGTGTTTCAGGTTCTCCAAGAACTATCTCCCTATGTGAAATTTGCTCATTTCACGGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGCTGAGAATGTTCACATCATTGATTTTGACATCATGGAGGGAATCCAGTGGCCACCCTTGATGGTTGATCTTGCAATGAGGAAAAACAGTACTACTTCCCTTAGAGTATCAGCGATCACAGTGGACGAGAGAGGTGCTGCTTCTGCTGAACAAACAGGAAGAAGGCTGAAAGAGTTTGCAGCTTCTATAAACTTTCCATTTATGTTTGATCAAATGATGATGGAAAGAGAAGAAGATATTGAAGGAATTGAAGTTGGTGAAACAGTGATAGTGAACTGTATGATAGACCAGTGGATGCCTAATAGGAGCTTCTCACTGGTGAAAACATTTTTGGATGGTGTGAGGAAACTGTGGCCGAGGCTCGTGGTTTTGGTGGAAGAAGAATTGTTTAACTTTTCAAGGCTGAAATCTATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACAGTGCAGTTTGTGATTCACTTGGTAGTAGTGTGTGGGGTAGCCACAAGATGCAGTCAAGGCTGATAGAGAAAGAGATTTTGGGGCTCAGAATATTGGACAGTGTGAGACAGTTTCCTTGTGAGAAAAAGGAGAGAAAGGTTTGGGAAGAAGGGTTTTATTCCTTGAAAGGGTTTAAATGTGTTCCTATGAGTAGTTGTAATATTTCACAAGCCAAGTTCTTGGTGAGC 1335 0.4112 MDYEEFDFSFGSPYMNQLHECCLENAFPFQTEDISSPNTIMDEMFGEESMEGLLLQHTNNQDFGFMNHNDPPEIEFCDGFGFSPEENVHVSMEEDDGGCYLKGIQAELMEQTSLADLLLTGAEAVEAQNWDLASDIIEKLNNASSLEKGDGLLNRLAYFFAQGLYYKSTNDPELLMQRGAVSAHRDAFCVFQVLQELSPYVKFAHFTANQAILEATEGAENVHIIDFDIMEGIQWPPLMVDLAMRKNSTTSLRVSAITVDERGAASAEQTGRRLKEFAASINFPFMFDQMMMEREEDIEGIEVGETVIVNCMIDQWMPNRSFSLVKTFLDGVRKLWPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYSAVCDSLGSSVWGSHKMQSRLIEKEILGLRILDSVRQFPCEKKERKVWEEGFYSLKGFKCVPMSSCNISQAKFLVS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04150 445 ProSiteProfiles GRAS family profile. 105 445 IPR005202 -
Vimu11g04150 445 Pfam GRAS domain family 115 444 IPR005202 -
Vimu11g04150 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 443 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04150 Vimu-Chr11 63129513 63130943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04150 84 444 GRAS Transcription Factor Family AT5G41920 32.461 2.63e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu11g04150 GRAS 3.4e-69 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04150 - - gmx:100804613 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04150 11 63129513 63130943 Vimu11g04150 11 63129513 63130943 ECH