Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04148 ATGTATGCTTCAACTTCCTTTACTTCACATTTGCTTCATGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGACCCTCTTCATCAATCAATCAACGTAGCTGACTTGCCCAAATCCTCAGATTCCATCACTTACAACTCAACAGACTCCTATTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCGCTGTGCTCTTGTGTGCTGTCATTTGCTCACTCGGCTTGAATTCCATCATAAAGTGTGTCTTGAGATGCTCAAACATAGTCATCAACGACCCTTCAACTGTCACCAACCCTTCATCACGTTTGGCCAACACAGGCATCAAGAAGAAAGCCCTCAAGACTTTTCCCACCGTCAGCTACTCTACAGAGTTCAAACTCCCAGGTTTGGACACCGAGTGTGTCATATGCCTCTCAGAGTTTGTCAATGGTGATAAGCTACGCATTCTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAGATGGCTTAGCTCTCACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAGCCACCAGTGCCACAAACCATTGTAAGGATCCAACCACTAGAACATGAAGCTTTGGAGCGTAACTATAGGGAACTATGCTAG 669 0.4514 MYASTSFTSHLLHDLLMDSSSRKLLLQDPLHQSINVADLPKSSDSITYNSTDSYFKGRDFDANVVMILAVLLCAVICSLGLNSIIKCVLRCSNIVINDPSTVTNPSSRLANTGIKKKALKTFPTVSYSTEFKLPGLDTECVICLSEFVNGDKLRILPKCNHGFHVRCIDRWLSSHSSCPKCRQCLIETCKKIVGSQPPVPQTIVRIQPLEHEALERNYRELC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04148 222 Coils Coil 211 222 - -
Vimu11g04148 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
Vimu11g04148 222 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vimu11g04148 222 Pfam Ring finger domain 139 182 IPR001841 -
Vimu11g04148 222 CDD RING-H2_EL5-like 139 182 - -
Vimu11g04148 222 SMART ring_2 140 181 IPR001841 -
Vimu11g04148 222 FunFam RING-H2 finger protein ATL73 101 187 - -
Vimu11g04148 222 PANTHER RING-H2 FINGER PROTEIN ATL78 17 212 IPR044602 GO:0016567|GO:0016740
Vimu11g04148 222 SUPERFAMILY RING/U-box 118 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04148 Vimu-Chr11 63091694 63092927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04148 23 186 C3H Transcription Factor Family AT3G10910 46.199 3.10e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04148 K19040 - gmx:100527126 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04148 11 63091694 63092927 Vimu10g01788 10 25233854 25235807 PCT