Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04147 ATGTCTGCCATGAACTCCAGTGTCTTGGCCTGTAACTATGCCAGATCAGGATGCTCCGACCTCAATGCCAAGCTCAGCTCCATGCCTTCTTCTGTTGCATCTCCACAAGTTTCTGCTCTCAAGTTGCCTGTGATCAAGGCTCATCAAGCAAAGATTACTGAATCTGAATCAAACCAAGGAAGAAGAAGTGCCCTTGTCTACTTAGCAGCTACCCTTTTCACTGCTGCAGCTGCTGCTTCCAACTCTTCAGCCAATGCAGGAATCATTGAAGAATACCTTGAAAGGAGCAAGACCAACAAGGAACTTAATGACAAGAAAAGGTTAGCCACCACTGGAGCCAACTTTGCAAGAGCATACACTGTGGAATTTGGCACTTGCAAGTTCCCTGAAAACTTCACCGGTTGCCAAGATCTGGCTAAGCAAAAGAAAGTGCCTTTTCTTTCTGATGATTTGGACCTAGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 516 0.4477 MSAMNSSVLACNYARSGCSDLNAKLSSMPSSVASPQVSALKLPVIKAHQAKITESESNQGRRSALVYLAATLFTAAAAASNSSANAGIIEEYLERSKTNKELNDKKRLATTGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04147 171 FunFam Photosystem I reaction center subunit N 87 171 - -
Vimu11g04147 171 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 44 171 IPR008796 GO:0009522|GO:0015979
Vimu11g04147 171 Gene3D - 87 171 IPR044907 -
Vimu11g04147 171 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 171 IPR008796 GO:0009522|GO:0015979
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04147 1 142 Calmodulin-binding Proteins AT5G64040 64.583 2.18e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04147 K02701 - cave:132166062 251.136