Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04136 ATGGATTCTAACGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATACCGCCATCGCAGTGGCGTCTGCTGACCACAGTGATGAATTGAGGCGTCGAAGAGACGGAATCGTTGAGCGCCTCTATGCGACGAGTTTCTTGTCATCATCGCGGTGTCCAAATTGTGACATCGACGACGTTAGAGAAACAGAGATGCAAAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTTTTGTTTGATGATGAACAAAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGATATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTAGTCAGGAAATGGAAGGAGATTATAGATGAATGGGTGAAGTTGAAGACGCCAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATCCAACAAAATGAACATCGTCAGATTCCCGATTTTGCAGACTCGTCAAATCCGCACAATGAAAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAGTTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAGTTACTACTCCTACACAACCTCAAAACAGACAAAGGGAGAGCAATTTTGAGTTGGATAAACTTGCTTCAGCGAGAAAGCGACTCCAAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAGCAAAGAACGATCCAGGTGATGGATCTCCATGAGTTGCCAAAACCCAAGAATGCCTACTTCGGAAAAGGCAAAGGTGGCACCAGTCAGGGAAGACACTAG 945 0.4508 MDSNDFRSILESAGIDIWMLMDTAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCDIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKIQQNEHRQIPDFADSSNPHNESFGSEHNNIEPQQRKPKAVPHKESPLKPSASVTTPTQPQNRQRESNFELDKLASARKRLQENYKEVANAKKQRTIQVMDLHELPKPKNAYFGKGKGGTSQGRH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04136 314 MobiDBLite consensus disorder prediction 200 220 - -
Vimu11g04136 314 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 178 IPR035441 -
Vimu11g04136 314 SMART TFS2_5 95 166 IPR003617 GO:0005634
Vimu11g04136 314 MobiDBLite consensus disorder prediction 238 254 - -
Vimu11g04136 314 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 314 IPR044790 -
Vimu11g04136 314 CDD TFIIS_I 92 165 - -
Vimu11g04136 314 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 174 IPR035441 -
Vimu11g04136 314 Coils Coil 260 283 - -
Vimu11g04136 314 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Vimu11g04136 314 MobiDBLite consensus disorder prediction 200 259 - -
Vimu11g04136 314 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04136 Vimu-Chr11 63007834 63009967 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu11g04136 Med26 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04136 - - gmx:100796457 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04136 11 63007834 63009967 Vimu11g04136 11 63007834 63009967 ECH
Vimu10g01802 10 25469120 25470995 Vimu11g04136 11 63007834 63009967 ECH
Vimu11g04136 11 63007834 63009967 Vimu10g01802 10 25469120 25470995 PCT