Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04135 ATGGCAGAATCTGCAAAATCTCCACAAACTGAACTTCCTCACAGAGCTTTTGGTTGGGCTGCTACAGACACTTCTGGGACCCTTTCGCCCTTTCATTTTTCCAGAAGGGAAAACGGCGTTGACGATGTCACCGTCCAGATTCTGTTTTGTGGGGTTTGCCATTCTGATCTTCACACTGTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCAGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGAAATAATGTGAAATACTTTAAAGCGGGTGATAAAGTGGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAATGTTGCCAACAGGATTTAGAGAATTACTGTCCCCGCCCTGTGTTTACCTATAATTCTCCTTATTATGATGGGACACGAACCCAAGGTGGTTATTCTAACATTGTGGTTGTCAACCAGCGTTATGTGCTCCGATTTCCTGACAACTTACCCCTTGATGCTGGTGCTCCACTGCTGTGTGCGGGGATAACTGTGTATAGCCCTATGAAATATTATGGGATGACAGAGCCTGGCAAACATTTGGGAGTGGCAGGGCTAGGTGGGTTAGGCCATGTTGCAATCAAAATTGGTAAGGCCTTTGGACTGAAAGTTACTGTCATTAGTGGATCTCCAAACAAGGAAGCTGAGGCAGTTGGCACACTTGGGGCTGATTCTTTCGTTCTTTCCTCAGACCCTGCAAAAATGAAGGCTGCTATGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGACTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTAATTACTGTAGGGTTGCCTAGCAAGCCTCTTGAGGTGCCTATCTTTCAAATAGCCGCAGGAAGGAAGCTTGTAGGGGGGAGCAACTTTGGAGGGATCAAGGAAACCCAGGAAATGCTTGATTTCTGCGGAAAGCACAACATAACTGCAAATATCGAGCTGATTAATATTGACCAAATCAACACTGCCATGGAAAGGCTTGGCAAAGGTGATGTGAAATATCGCTTTGTGATTGATGTGGCCAACTCTTTCTCAAGTTTGTAG 1092 0.456 MAESAKSPQTELPHRAFGWAATDTSGTLSPFHFSRRENGVDDVTVQILFCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKVGNNVKYFKAGDKVGVGVIVESCKECECCQQDLENYCPRPVFTYNSPYYDGTRTQGGYSNIVVVNQRYVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKIGKAFGLKVTVISGSPNKEAEAVGTLGADSFVLSSDPAKMKAAMGTMDYIIDTISAVHSLTPLLGLLKLNGKLITVGLPSKPLEVPIFQIAAGRKLVGGSNFGGIKETQEMLDFCGKHNITANIELINIDQINTAMERLGKGDVKYRFVIDVANSFSSL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04135 363 SMART PKS_ER_names_mod 26 354 IPR020843 GO:0016491
Vimu11g04135 363 SUPERFAMILY GroES-like 23 188 IPR011032 -
Vimu11g04135 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Vimu11g04135 363 PANTHER ALDEHYDE REDUCTASE 10 359 IPR047109 GO:0016616
Vimu11g04135 363 FunFam Cinnamyl alcohol dehydrogenase 170 326 - -
Vimu11g04135 363 Pfam Alcohol dehydrogenase GroES-like domain 41 153 IPR013154 -
Vimu11g04135 363 Gene3D - 19 356 - -
Vimu11g04135 363 Pfam Zinc-binding dehydrogenase 197 318 IPR013149 -
Vimu11g04135 363 FunFam probable cinnamyl alcohol dehydrogenase 19 178 - -
Vimu11g04135 363 CDD CAD1 17 355 IPR047109 GO:0016616
Vimu11g04135 363 Gene3D - 170 326 - -
Vimu11g04135 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04135 Vimu-Chr11 62996705 62999836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04135 14 360 Monolignol Biosynthesis Gene Families AT2G21730 69.914 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04135 K00083 - gmx:100819684 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04135 11 62996705 62999836 Vimu11g04135 11 62996705 62999836 ECH