Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04132 TTGGGCAGAGGTTCAGAGTACAGTGAGACTAAAGTAACGCAGTGTGGTGGTGACGAAGGGGTTTCAGTCCCGAGAAGTGAAGAAGAAGAGATGAGCGTGGAAGATCTTCCGCGGAAAGAGGTTAACGTGCTGAAAGGTCACGAGGGTGCCGTGTTGGCCGCGAGGTTCAACGGTGACGGCAATTATTGTCTGAGTTGCGGAAAAGACCGTACCATACGCCTCTGGAATCCTCACCGTGGAATCCATATCAAGACCTATAAATCCCACGGCCGTGAAGTTCGCGATGTCCACGTCACACCGGACAATTCCAAGCTATGTTCCTGTGGTGGAGATCGACAAATATTTTATTGGGATGTTGCAACTGGACGTGTAATTAGGAAATTTCGTGGCCATGATGGTGAGGTAAATGGCGTCAAATTCAATGAGTATTCATCTGTTGTAGTCTCAGCAGGCTATGATCAATCGTTGCGTGCTTGGGACTGCAGATCCCACAGCACCGAGCCGATTCAGGTGGATTCCGTTGACTTATATGCATTGTGCTCTATTTCTTTCTACTGGCTTATTAATAGAGTCGCCATTGATATGCAGATTATTGACACATTTGCAGATAGTGTTATGTCTATTTGTTTAACGAAAACTGAAATTATTGGAGGAAGTGTTGATGGAACTGTTCGGACATTTGACATTCGAATTGGCAGAGAAATTTCCGATAACTTGGGGCAACCCGTCAACTGTGTATCAATGTCAAATGATGGTAACTGCATTCTAGCAGGTTGTTTAGACTCTACTTTGCGTCTTTTGGACAGGTCCACTGGTGAATTGTTACAAGAATATAAAGGACACACTAATAAGTCGTACAAATTGGATTGCTGCCTTACCAATACCGATGCTCATATAACTGGTGGGTCTGAGGATGGCTTCATTTATTTCTGGGATCTCGTAGATGCATCTGTTGTTTCAAGATTCAGGGCCCATACCTCAGTGTCTGATGATAATGCCATAATCTGCTTGTTACTGCTGGAGCAGATAGCATTTTGGGTAACCAGTGTTAGTTATCACCCAAAGGAAAACTGCATGGTAACTTCTTCAGTGGATGGCACCATTCGAGTATGGAAAACATAA 1122 0.443 MGRGSEYSETKVTQCGGDEGVSVPRSEEEEMSVEDLPRKEVNVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGGDRQIFYWDVATGRVIRKFRGHDGEVNGVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQVDSVDLYALCSISFYWLINRVAIDMQIIDTFADSVMSICLTKTEIIGGSVDGTVRTFDIRIGREISDNLGQPVNCVSMSNDGNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNTDAHITGGSEDGFIYFWDLVDASVVSRFRAHTSVSDDNAIICLLLLEQIAFWVTSVSYHPKENCMVTSSVDGTIRVWKT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04132 373 Gene3D - 5 183 IPR015943 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 346 372 IPR001680 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 272 312 IPR001680 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 39 76 IPR001680 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 83 118 IPR001680 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 241 266 IPR001680 GO:0005515
Vimu11g04132 373 Pfam WD domain, G-beta repeat 123 160 IPR001680 GO:0005515
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 373 IPR001680 GO:0005515
Vimu11g04132 373 CDD WD40 40 372 - -
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 44 85 IPR001680 GO:0005515
Vimu11g04132 373 PANTHER WD40 REPEAT PROTEIN 34 171 - -
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 128 160 - -
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 86 127 IPR001680 GO:0005515
Vimu11g04132 373 SUPERFAMILY WD40 repeat-like 36 372 IPR036322 GO:0005515
Vimu11g04132 373 SMART WD40_4 79 118 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 232 268 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 315 372 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 271 312 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 37 76 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 121 160 IPR001680 GO:0005515
Vimu11g04132 373 SMART WD40_4 194 228 IPR001680 GO:0005515
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 373 - -
Vimu11g04132 373 MobiDBLite consensus disorder prediction 22 36 - -
Vimu11g04132 373 MobiDBLite consensus disorder prediction 1 36 - -
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 44 76 - -
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 86 123 - -
Vimu11g04132 373 Gene3D - 189 291 IPR015943 GO:0005515
Vimu11g04132 373 Gene3D - 292 373 IPR015943 GO:0005515
Vimu11g04132 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 160 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04132 43 345 Eukaryotic Initiation Factors Gene Family AT2G46290 24.756 1.65e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04132 K13124 - gmx:100795039 584.719