Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04128 ATGGCCGGAACTTCGTTTTCTACAATTGACAAATTTCCACCAAAACTTAATATCCTTGTCATTGATACTGACCCTGAAGCTCTTGAATTAATCGAGAAAAAATGCAAAGAGAAATCTCATCAAGTTGTAAAATGCTCGGAATCTTCAAGGGCTGTGGATGTTTTGCTGAAAAAAGAAATAGACATTCATTTGATCCTCATGGAGCTTCATATGCCAATGATGAATGGCTTTGCATTCCTGCAATTTCTCAACAAAGAAGAATTTGATATTCCTTTTGTCATGATGTCTATGGATTTTACTTGGTTTTCCATGACAAAGGCTTTCCAACTTGGAGCTATGGAATATTTCATGAAACCCTTGGATGAGCGGTTAGATTTGTTGCAACCTTTCTTAAGGCATTATTGTGCCAGGCGTAACAACTTAAAAGATGATGAGACAAGTGATGAAGAAGCCAAAGTCGATGATATCCTGGACAAGAAAGATGATATCCTGGACAAGAAAGATGATACCCTGGACAAGAAAGATGATACCCTGGACAAGAAAGATGGTACCCTAGTATGA 561 0.3779 MAGTSFSTIDKFPPKLNILVIDTDPEALELIEKKCKEKSHQVVKCSESSRAVDVLLKKEIDIHLILMELHMPMMNGFAFLQFLNKEEFDIPFVMMSMDFTWFSMTKAFQLGAMEYFMKPLDERLDLLQPFLRHYCARRNNLKDDETSDEEAKVDDILDKKDDILDKKDDTLDKKDDTLDKKDGTLV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04128 186 Gene3D - 15 167 - -
Vimu11g04128 186 Pfam Response regulator receiver domain 18 122 IPR001789 GO:0000160
Vimu11g04128 186 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Vimu11g04128 186 SMART REC_2 16 130 IPR001789 GO:0000160
Vimu11g04128 186 MobiDBLite consensus disorder prediction 167 186 - -
Vimu11g04128 186 SUPERFAMILY CheY-like 14 143 IPR011006 -
Vimu11g04128 186 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 159 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04128 Vimu-Chr11 62942032 62942792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04128 7 140 Response Regulator Gene Family AT4G16110 31.343 8.17e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04128 Response_reg 3.6e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04128 - K14491 vra:106769483 184.111