Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04127 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTGGATTCCTCCAAGAAGAAGAAGGAGATCACGGACAAGATCGAGAGAAGTTACCGGAAGCGCGACGTCGACGACGATCCCCATGCCGACGAAAGAAGGAGCAAGAGAAGGGGCGATGACGACAACGGTGGTTCCAAGAAAGATCGCGACAGAGATAGGGACAGAGAACGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGATAAGGATAAGGACAAGGACAAGGACAAGGATAGGGATAGGAGAGATCGTGATAAGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAGGGAACGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGGACGGGATCGGTTTAGGTTACCTATTCCTAGCAACGCAGTCAAAGTTGTTTAGTACCCTTAAGGTATTAAGGGATTTTCTCGAGACTTTGAAACTACGATCGCCTTACTATAGAGAACAGACGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGCAATGCGATAATGATGAGGGATGGTGGGAATACCTTGCACTCATGTTTAATCAATTCATCCTGCGCACTCAAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTGCATCACTTTGCTGTATGCTTTGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCCCTCTCTGGTCAACTTCTTCTCGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAACGCTTCTGGTGGAGCAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAGTTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTCTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACTGCAAAATCAGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCGGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGTTCTTCCAGCACAAGTTATGCCTACCCCAATGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATAGACATCAAAGAAGACGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGTGGCAAGGTTTGGAAGCGGGAGCAGCGCATCAAGACAGAAAAAAGCAGACAAGGAAGATTTGGGGAGGAGGCATTGGCCATCGAGGAGAGGATAACAACAAAAGCGTCTTCAAGAGGTAAGTGCCCTTGCTCACTCCTGGCTCACACCTTGTTCACTTGA 2010 0.4716 MDFDEYEYLEKTVEEDVDSSKKKKEITDKIERSYRKRDVDDDPHADERRSKRRGDDDNGGSKKDRDRDRDRERERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDKDKDKDKDRDRRDRDKDKEKERERRERDREREERERSRRSRSRSERDRDRERDFEMRDGRDGIGLGYLFLATQSKLFSTLKVLRDFLETLKLRSPYYREQTRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTLHSCLINSSCALKLELSALEFLFPCITLLYALYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPMVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLQFETVEAASAAQRAMHMRWFARSGKVWKREQRIKTEKSRQGRFGEEALAIEERITTKASSRGKCPCSLLAHTLFT 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04127 669 MobiDBLite consensus disorder prediction 1 165 - -
Vimu11g04127 669 FunFam Splicing factor CC1-like 362 468 - -
Vimu11g04127 669 SUPERFAMILY RNA-binding domain, RBD 539 615 IPR035979 GO:0003676
Vimu11g04127 669 Gene3D - 103 363 IPR012677 -
Vimu11g04127 669 SUPERFAMILY RNA-binding domain, RBD 379 457 IPR035979 GO:0003676
Vimu11g04127 669 NCBIfam splicing factor, CC1-like family 322 616 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu11g04127 669 Coils Coil 128 153 - -
Vimu11g04127 669 CDD RRM1_RBM39_like 235 350 - -
Vimu11g04127 669 Gene3D - 539 624 IPR012677 -
Vimu11g04127 669 SUPERFAMILY RNA-binding domain, RBD 225 278 IPR035979 GO:0003676
Vimu11g04127 669 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 616 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu11g04127 669 Gene3D - 375 471 IPR012677 -
Vimu11g04127 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 379 457 IPR000504 GO:0003723
Vimu11g04127 669 MobiDBLite consensus disorder prediction 13 165 - -
Vimu11g04127 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 278 IPR000504 GO:0003723
Vimu11g04127 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 381 451 IPR000504 GO:0003723
Vimu11g04127 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 566 614 IPR000504 GO:0003723
Vimu11g04127 669 CDD RRM3_RBM39_like 542 615 - -
Vimu11g04127 669 SMART rrm1_1 235 298 IPR000504 GO:0003723
Vimu11g04127 669 SMART rrm1_1 380 453 IPR000504 GO:0003723
Vimu11g04127 669 SMART rrm1_1 544 624 IPR000504 GO:0003723
Vimu11g04127 669 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 472 561 IPR029123 -
Vimu11g04127 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 278 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04127 Vimu-Chr11 62920201 62929488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04127 351 452 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 6.12e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04127 K13091 - gmx:100793461 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04127 11 62920201 62929488 Vimu10g01812 10 25685971 25694240 ECH
Vimu11g04127 11 62920201 62929488 Vimu11g04127 11 62920201 62929488 ECH
Vimu11g04127 11 62920201 62929488 Vimu10g01812 10 25685971 25694240 PCT