Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04123 ATGAGAAGAGGGGAGAATAAGGTATACGATTACGAGTACAGGGCAGAGAAGGTGGAACCAAAAAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGAGACCCATTCAAGGCTACCAGAGTGTGGTTAGGAACATTCGAGACCGCTGAGGATGCAGCCAGAGCCTACGATCAAGCTTCTTTACGTTTCAGAGGCAATAAGGCCAAACTCAACTTCCCCGAAAATGTCAGGCTCAGACATCAATCACCGGAACCACCACCAGCCGCACCCCTTTTCTCCATTCCCTCTACAACTGAACCCATTGTTCATACTCAGCCTCAGGGTTCACATGATTCCGCCAACTTTTACGAATATTGTTACTCGCATGTACATGAGTTTCCCGTGAGCCTCTATGACCAGGTTGCTGTCTCATCATCATTCTCTCTGGCGGCTTCTCATCTTCAATCTTCACCTTCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCATCTCTTCTGTCCCCTCATGCTACGCATCTATCCCCATGGTCTTCTTCTGCGCCAGATTACACTACCCATCCTTCCTCCTCCTAG 597 0.4874 MRRGENKVYDYEYRAEKVEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPENVRLRHQSPEPPPAAPLFSIPSTTEPIVHTQPQGSHDSANFYEYCYSHVHEFPVSLYDQVAVSSSFSLAASHLQSSPSYSSSSTITSSQPSLLSPHATHLSPWSSSAPDYTTHPSSS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04123 198 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Vimu11g04123 198 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Vimu11g04123 198 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 PANTHER DNA-BINDING DOMAIN 16 160 IPR044808 GO:0003700|GO:0009873
Vimu11g04123 198 MobiDBLite consensus disorder prediction 158 198 - -
Vimu11g04123 198 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Vimu11g04123 198 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04123 Vimu-Chr11 62900435 62901031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04123 21 95 AP2-EREBP Transcription Factor Family AT2G33710 70.667 3.18e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g04123 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04123 - - var:108344045 349.362