Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04118 ATGGGATGCGTTAACTCCAGATATTCTCCTGATGGAAACGCTGAGAGAAGGTTGAAACGAAACAAAGAAGATGCAACGAAATCACTGATCCACAACAAGAAGGAGCATTCATCAAACAGGTTGAAAGAAAAGATAGAAAGAGATAATAGTAATAGTGATGCAAAGGGTGATGCTAGAAACGATAACAAGAGTGATGAGGTTGGTGAGAATGTTACTCAGAGATCTGAGGTAAAGAAGAATATTGGTGCACACTCTGAGTTTGTGGAAGGTTGGCCAAAATGGCTAGTTGATAATATCCCACCAAACGTGTTGGATAGCTTCGTTCCTAAGAGTGTTGATTCCTATGAAAAACTTGGAAAGTTGGGGCATGGAACATATAGCAATGTATACAAAGCCAGAGATAAGGAGAGTGGAAAGATTGTTGCTTTGAAGAAGGTAAGGTTTGACACATCAGACCCAGAAAGCATAAAGTTTATGGCAAGAGAGATAATGATTCTGCAGAAGCTGGATCATCCCAATGTCATCAAACTCAAAGGACTTGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTCGTTACATGCACTCTGATCTTACAAGAATCATCTCTCGTCCTACGGATAAACTCACTGAATCACAGATCAAGTGTTATATGCAGCAACTGCTTCTGGGGCTACAGCACTGTCATGAGAGAGGAGTTATGCATAGAGACATTAAACCTTCCAACTTGTTAGTAGATAAAAAAGGAGTGCTAAAAATTGCAGATTTTGGGCTAGCAAATTCTTTTGCTATAAAACCTGAAGGGCCTTTCACTAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTCCTTTTGGGTTCGACAGATTATGGATATGAAATTGATCTCTGGAGTGCAGGATGCTTGTTAGCTGAGATGTTCCTTGGAAGGCCACTTATGCCTGGGAGAACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTACACCTTCTGCGGACTATTGGATTAGAAGGAAGCTAACGACGAGCTTATTTCCACCACTACATTACAAAGCTAATTATGATGAGAATTTTAAGGATTTTCCTTCCTCTGCTTCTGCTCTCTTGACTACACTTCTTCATCTAGACTCTCATGCACGTGCCACAGCTGCTTCTGCTCTTCAAAGCCAATTTTTCAAGTCAAGTCCATTAGCATGCGACCTTTCAGCTTTGACAGTAATATACAAAGACGAGGATGAATACTCACAAACAAAAAGAAGAAAAAGGCGAAAGGGTCTGAAAAACAAAGGGCATGTAGTTCAAACATGTGCATGCAATATGAACCAATCACATAAGAACAATACTTGTGAACAAAGCAGGAGAGACTCAGAATCATTCAAAGAGAAGAGTGTGGCACAAGAGATTAAAGGTGAAGAAATTGGAAAAAGTGAAAGCAACATATGGTCAGTTTTTATGAAGGAGAGGAGTATGAGCATGAATGCATCTTTATCACCAGTTTTTCTCTCCAGTGTGAGAAAATCCCCTAAAACAGAGGGCCATCCGAATGCTCTTAAGAACATAAGAAACTACACACTCTTACAAGCTTCAATAATTGATATGATCCATCGCAATGAAGGCAATGAAATTGGTCCGTTGCGTAAATCCTTTTCTGCGTTGGATTTTCGCCTTCCTCCAGACAAGCTATGA 1701 0.4004 MGCVNSRYSPDGNAERRLKRNKEDATKSLIHNKKEHSSNRLKEKIERDNSNSDAKGDARNDNKSDEVGENVTQRSEVKKNIGAHSEFVEGWPKWLVDNIPPNVLDSFVPKSVDSYEKLGKLGHGTYSNVYKARDKESGKIVALKKVRFDTSDPESIKFMAREIMILQKLDHPNVIKLKGLATSRMQYSLYLVFRYMHSDLTRIISRPTDKLTESQIKCYMQQLLLGLQHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFAIKPEGPFTNRVVTLWYRAPELLLGSTDYGYEIDLWSAGCLLAEMFLGRPLMPGRTEVEQLHMIFKLCGTPSADYWIRRKLTTSLFPPLHYKANYDENFKDFPSSASALLTTLLHLDSHARATAASALQSQFFKSSPLACDLSALTVIYKDEDEYSQTKRRKRRKGLKNKGHVVQTCACNMNQSHKNNTCEQSRRDSESFKEKSVAQEIKGEEIGKSESNIWSVFMKERSMSMNASLSPVFLSSVRKSPKTEGHPNALKNIRNYTLLQASIIDMIHRNEGNEIGPLRKSFSALDFRLPPDKL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04118 566 ProSiteProfiles Protein kinase domain profile. 115 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04118 566 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
Vimu11g04118 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vimu11g04118 566 Gene3D Transferase(Phosphotransferase) domain 1 198 437 - -
Vimu11g04118 566 SMART serkin_6 115 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04118 566 MobiDBLite consensus disorder prediction 453 472 - -
Vimu11g04118 566 MobiDBLite consensus disorder prediction 448 472 - -
Vimu11g04118 566 Pfam Protein kinase domain 115 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04118 566 Gene3D Phosphorylase Kinase; domain 1 103 197 - -
Vimu11g04118 566 FunFam Mitogen-activated protein kinase 196 405 - -
Vimu11g04118 566 MobiDBLite consensus disorder prediction 1 77 - -
Vimu11g04118 566 MobiDBLite consensus disorder prediction 12 77 - -
Vimu11g04118 566 FunFam probable serine/threonine-protein kinase At1g54610 102 197 - -
Vimu11g04118 566 SUPERFAMILY Protein kinase-like (PK-like) 109 402 IPR011009 -
Vimu11g04118 566 PANTHER CELL DIVISION PROTEIN KINASE 113 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04118 Vimu-Chr11 62834883 62841923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04118 100 429 Core Cell Cycle Gene Families AT5G10270 43.966 6.95e-90 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu11g04118 Pkinase 6.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04118 K08819 - gmx:102667260 844.343