Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04109 ATGTCAACAACTTCACATACAATTGCTCACCACAGCTTATTTGAGGAGCAGGATCAGATTCCTACACAGATGGGCTTCTTTCCCTTTTCATCAAACCTTACTTTGCCTCCTTTGGGTTGCCACCAATCCTCTTTGAAAGCCTTCACCTCCATAACAACACCTTCTTCTTCACTTCCCATATCTCAACAAGATTCTTCTACATCAAATCTAACACAAACCCTATTTCACAAGTCAAGAGAACACCTCACTTCTACCTTTGGAGGACCTCAGTTTCTGTCCTTGCATAGATCCACTCTAAATCCATGGGCACTGGGAGATGTGAGTGACTGCTTGAGCAGTAAAAGAAGTGGATTTGATGATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAACTGTCGTGTAAAGAAACGCGTGGAGCGCTTAGCGGAGGATCCAAGAATGGTGATAACAACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATATTGAAGATTCATCATCTCCATCTCAACTTGGGAACTTCTTATGGTAG 699 0.432 MSTTSHTIAHHSLFEEQDQIPTQMGFFPFSSNLTLPPLGCHQSSLKAFTSITTPSSSLPISQQDSSTSNLTQTLFHKSREHLTSTFGGPQFLSLHRSTLNPWALGDVSDCLSSKRSGFDDHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDIEDSSSPSQLGNFLW 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04109 232 Gene3D WRKY domain 142 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04109 232 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 216 IPR044810 GO:0003700
Vimu11g04109 232 FunFam WRKY transcription factor 57 141 215 - -
Vimu11g04109 232 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04109 232 MobiDBLite consensus disorder prediction 217 232 - -
Vimu11g04109 232 MobiDBLite consensus disorder prediction 211 232 - -
Vimu11g04109 232 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04109 232 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04109 232 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04109 Vimu-Chr11 62771900 62773378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04109 125 232 WRKY Transcription Factor Family AT4G39410 76.991 2.60e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g04109 WRKY 9.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04109 - - pvu:PHAVU_002G266400g 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04109 11 62771900 62773378 Vimu11g04109 11 62771900 62773378 ECH