Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04108 CACTCTATTTGTTGTTGGTTTGTGCTATCTGCTTCTCATTTTAGCAGGATATATGGTTTCACAGATGCTTGTTCGAAGAGAAAACAGAACTTTCTTCTGAAAAATTCTTTTGCATCGGTTAGCATGGGAGATGAAAAGCCTTTTGACTTCTTACGCACTTTATTTGCAAGATGGAATTTGCAGAGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACTATTAAAACACGTCTGCAGGCAGGCTGCTCGCGGGGGAGAAAAACTAATATTGAAAGGCTTGTATTCCGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTTTATTTGTGGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAAAATCTGAGTGCTTTTAGTCATTTAACTGCAGGTGCCATAGGAGGCCTTGCTGCTTCATTGATTCGTGTTCCAACAGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTACTTCAGCTTCTGGTGCCGTTAGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGGGTATGGATCTTTTTTGTTGCGAGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGTGACAAGTTACATTCGTACCCCATATGATGCTTTGGTTCAGTTAAAAATGAAAAAATATGGAGGATTAGGGAGAGAGCCTGAATCGTTTTTCTTTTGGTTCTCTGATCTACATCATGCTTTCATGGCAAATCCAACTAGACACCAGTTTGTGTTGGGATGTGAGCAAGCATTGTTTCTTGTAGGTGCACTAACTGGAGCCATAACTACTCCCCTTGATGTCATCAAGACAAGGTTAATGATTCAAGGATCTGCAAACCAATACAAGGGAATTGTTGACTGTGTTCAAACTATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAACGTTTTCTTGCTGAGAGGCGTCCTATAGAATCTCAGCACACATACTCAGACAAAAGTAAAGATAAATAG 1146 0.4101 HSICCWFVLSASHFSRIYGFTDACSKRKQNFLLKNSFASVSMGDEKPFDFLRTLFARWNLQRALLQEVQLELLLKQLYTQSTLLKHVCRQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFSHLTAGAIGGLAASLIRVPTEVIKQRMQTGQFTSASGAVSFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAVTSYIRTPYDALVQLKMKKYGGLGREPESFFFWFSDLHHAFMANPTRHQFVLGCEQALFLVGALTGAITTPLDVIKTRLMIQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLAERRPIESQHTYSDKSKDK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04108 381 Pfam Mitochondrial carrier protein 287 364 IPR018108 -
Vimu11g04108 381 Pfam Mitochondrial carrier protein 140 221 IPR018108 -
Vimu11g04108 381 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 79 369 - -
Vimu11g04108 381 SUPERFAMILY Mitochondrial carrier 77 356 IPR023395 -
Vimu11g04108 381 Gene3D Mitochondrial carrier domain 46 377 IPR023395 -
Vimu11g04108 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 140 222 IPR018108 -
Vimu11g04108 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 275 361 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04108 Vimu-Chr11 62712088 62719666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04108 248 367 Chloroplast and Mitochondria Gene Families AT2G30160 28.926 8.73e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04108 K15111 - gmx:100799825 454.521